Showing: salmonreset
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Trouble with Tximport
salmon tximport written 3.5 years ago by smithng121530 • updated 3.5 years ago by Michael Love25k
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DEseq2 with different fastq read numbers after salmon
deseq2 salmon salmon rna seq written 10 months ago by danalvoronov10 • updated 10 months ago by Michael Love25k
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WGCNA following salmon/DESeq2
deseq2 wgcna salmon written 10 months ago by maya.kappil10 • updated 10 months ago by Peter Langfelder2.2k
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How to filter tximport output for edgeR?
edger rna-seq salmon tximport written 3.0 years ago by Peter0 • updated 3.0 years ago by Michael Love25k
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tximport - using hg38 with RefSeq (NM) and Gene Symbol
salmon hg38 tximport tx2gene.csv written 2.6 years ago by seb.boegel0 • updated 2.6 years ago by Michael Love25k
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tximport error reading salmon quantification files...
salmon tximport written 2.6 years ago by nschurch10 • updated 2.6 years ago by James W. MacDonald51k
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salmon quantification - identical transcripts in fasta file
salmon written 2.5 years ago by dmr21020 • updated 2.5 years ago by James W. MacDonald51k
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tximport using for data generated from other tools
salmon tximport express written 2.4 years ago by saumya.kumar0 • updated 17 months ago by Michael Love25k
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tximport error with salmon version
deseq2 salmon tximport written 2.2 years ago by agetzler0 • updated 2.2 years ago by Michael Love25k
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scater/scran with TPMs from Salmon - counts?
salmon scran scater written 21 months ago by nk0 • updated 21 months ago by Aaron Lun25k
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use tximport's countsFromAbundance when using DESeq2
rnaseq normalization deseq2 salmon tximport written 19 months ago by ginlucks0 • updated 19 months ago by Michael Love25k
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