Showing: sc3reset
1
vote
1
answer
123
views
1
answer
number of cell clusters in scRNA-seq
scran scater sc3 written 11 weeks ago by Bogdan580 • updated 11 weeks ago by Aaron Lun24k
0
votes
1
answer
137
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1
answer
4
votes
1
answer
215
views
1
answer
Using SC3 with batch corrected MNN values
scran scater sc3 scrna-seq batch correction written 5 months ago by hamza_karakurt30 • updated 5 months ago by Vladimir Kiselev150
0
votes
1
answer
153
views
1
answer
error running sc3_plot_de_genes in SC3 R package
sc3 written 7 months ago by weiqiao10290 • updated 6 months ago by Vladimir Kiselev150
0
votes
1
answer
236
views
1
answer
SC3 how to customize plots ?
plot heatmap marker sc3 consensus written 9 months ago by shaktirielland0 • updated 9 months ago by Vladimir Kiselev150
0
votes
1
answer
227
views
1
answer
Failure to cluster SC3
sc3 written 11 months ago by jhopkins0 • updated 11 months ago by Vladimir Kiselev150
1
vote
1
answer
205
views
1
answer
A question about log_transformed
sc3 written 14 months ago by liushang0 • updated 14 months ago by James W. MacDonald51k
0
votes
1
answer
242
views
1
answer
How can I show certain gene's expression in clusters by sc3
sc3 written 16 months ago by qq14934380600 • updated 16 months ago by Vladimir Kiselev150
1
vote
1
answer
284
views
1
answer
Is there a way to pull out the stability index matrix from the SC3 object?
sc3 written 19 months ago by yingzi.zhang10 • updated 19 months ago by Vladimir Kiselev150
0
votes
1
answer
443
views
1
answer
SC3 Package: marker genes and normal genes obtained from featureData
sc3 written 21 months ago by angela.ubn0 • updated 20 months ago by Vladimir Kiselev150
1
vote
1
answer
532
views
1
answer
Batch effect removal before SC3?
batch effect removebatcheffect sc3 written 21 months ago by muad.abdelhay10 • updated 21 months ago by Vladimir Kiselev150
1
vote
2
answers
718
views
2
answers
SC3_estimate_k formatting error?
scater sc3 written 22 months ago by alexandriapinto110 • updated 21 months ago by Vladimir Kiselev150
5
votes
2
answers
1.5k
views
2
answers
Raw count data for SC3 and SingleCellExperiment set problem
scater sc3 singlecellexperiment written 22 months ago by chengyuzou10 • updated 22 months ago by Vladimir Kiselev150
4
votes
1
answer
532
views
1
answer
SC3 gene clusters
single cell tutorial single-cell sc3 written 23 months ago by ahmed.elewa20 • updated 23 months ago by Martin Morgan ♦♦ 23k
1
vote
1
answer
701
views
1
answer
Does SC3 correct counts for gene length?
rna-seq single-cell scater sc3 biclustering written 2.1 years ago by rmf10 • updated 2.0 years ago by Vladimir Kiselev150
0
votes
1
answer
1.4k
views
1
answer
Import .mtx file in R
sc3 written 2.3 years ago by suman705320 • updated 2.3 years ago by Vladimir Kiselev150
4
votes
1
answer
518
views
1
answer
sc3_plot_expression, colour labels
single-cell sc3 written 2.3 years ago by cfustero20 • updated 2.3 years ago by Vladimir Kiselev150
3
votes
1
answer
488
views
1
answer
Sharing SC3_interactive results
shiny single-cell sc3 written 2.4 years ago by cfustero20 • updated 2.4 years ago by Vladimir Kiselev150
4
votes
3
answers
857
views
3
answers
using SC3 and scater for bulk-RNAseq
scater sc3 scrnaseq written 2.5 years ago by Assa Yeroslaviz1.4k • updated 2.5 years ago by Vladimir Kiselev150
2
votes
1
answer
755
views
1
answer
sc3_prepare function error
single cell single-cell scater sc3 written 2.6 years ago by Assa Yeroslaviz1.4k • updated 2.6 years ago by Vladimir Kiselev150
3
votes
1
answer
661
views
1
answer
SC3 tutorial error
sc3 written 2.8 years ago by Jenn20 • updated 2.8 years ago by Vladimir Kiselev150
3
votes
1
answer
645
views
1
answer
SC3 with latent variable corrected counts
single cell sc3 written 2.9 years ago by Mark10 • updated 2.9 years ago by Vladimir Kiselev150
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