4
votes
3
answers
590
views
3
answers
using SC3 and scater for bulk-RNAseq
scater sc3 scrnaseq written 18 months ago by Assa Yeroslaviz1.4k • updated 18 months ago by Vladimir Kiselev130
4
votes
3
answers
362
views
3
answers
Warning: negative size factors
scran scater singlecellexperiment size factor negative written 6 months ago by Marina V.V.0 • updated 6 months ago by Aaron Lun21k
3
votes
2
answers
3.6k
views
2
answers
BiocParallel/scater warning after move to R 3.4.0
biocparallel scater written 17 months ago by nhejazi0 • updated 15 months ago by andrew.blake30
0
votes
2
answers
815
views
2
answers
Change point size and remove outline in scater's plotPCA
rnaseq single-cell scater written 16 months ago by CodeAway20 • updated 5 months ago by angela.ubn0
1
vote
2
answers
426
views
2
answers
0
votes
2
answers
577
views
2
answers
How does newSCESet calculate expression matrix
scater written 16 months ago by siajunren0 • updated 16 months ago by davis90
0
votes
2
answers
668
views
2
answers
problems when working with SingleCellExperiment object in scater
scater singlecellexperiment written 11 months ago by chriad10 • updated 11 months ago by davis90
5
votes
2
answers
711
views
2
answers
Raw count data for SC3 and SingleCellExperiment set problem
scater sc3 singlecellexperiment written 10 months ago by chengyuzou10 • updated 10 months ago by Vladimir Kiselev130
1
vote
2
answers
381
views
2
answers
SC3_estimate_k formatting error?
scater sc3 written 10 months ago by alexandriapinto110 • updated 9 months ago by Vladimir Kiselev130
0
votes
2
answers
447
views
2
answers
error when installing beachmat
scater beachmat written 9 months ago by j.xu30 • updated 8 months ago by galib3610
3
votes
1
answer
575
views
1
answer
Scran normalization error with computeSumFactors
scran scater written 19 months ago by hrishi27n0 • updated 19 months ago by Aaron Lun21k
1
vote
1
answer
549
views
1
answer
sc-RNA data analysis using scater
scater scrna written 19 months ago by hrishi27n0 • updated 19 months ago by Aaron Lun21k
2
votes
1
answer
529
views
1
answer
sc3_prepare function error
single cell single-cell scater sc3 written 19 months ago by Assa Yeroslaviz1.4k • updated 19 months ago by Vladimir Kiselev130
3
votes
1
answer
912
views
1
answer
1
vote
1
answer
294
views
1
answer
calcAverage missing from Scater package
scater written 16 months ago by siajunren0 • updated 16 months ago by Aaron Lun21k
3
votes
1
answer
645
views
1
answer
Sparse matrices in Bioconductor objects for single-cell analyses
workflows scater simplesinglecell written 15 months ago by sandmann.t40 • updated 15 months ago by Aaron Lun21k
1
vote
1
answer
712
views
1
answer
Scater normalizeExprs() batch effect
batch effect scater written 13 months ago by Jenn20 • updated 13 months ago by Aaron Lun21k
1
vote
1
answer
554
views
1
answer
Does SC3 correct counts for gene length?
rna-seq single-cell scater sc3 biclustering written 13 months ago by rmf0 • updated 12 months ago by Vladimir Kiselev130
3
votes
1
answer
445
views
1
answer
Error when merging SCESet objects
single-cell scater written 12 months ago by NathL0 • updated 12 months ago by Aaron Lun21k
3
votes
1
answer
468
views
1
answer
is SCEset fully abandoned in scran?
normalization scran scater splatter written 11 months ago by wt2150 • updated 11 months ago by davis90
0
votes
1
answer
300
views
1
answer
Error scatter when creating SingleCellExperiment
scater written 11 months ago by ines.desantiago0 • updated 11 months ago by Aaron Lun21k
0
votes
1
answer
305
views
1
answer
1
vote
1
answer
284
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 8 months ago by nk0 • updated 8 months ago by Aaron Lun21k
0
votes
1
answer
164
views
1
answer
calculateQCmetrics doesn't accept `numeric` `feature_controls` in scater 1.6.2
scater written 8 months ago by Andrew_McDavid150 • updated 8 months ago by Aaron Lun21k
1
vote
1
answer
259
views
1
answer
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