4
votes
3
answers
419
views
3
answers
using SC3 and scater for bulk-RNAseq
scater sc3 scrnaseq written 11 months ago by Assa Yeroslaviz1.3k • updated 11 months ago by Vladimir Kiselev130
2
votes
2
answers
2.5k
views
2
answers
BiocParallel/scater warning after move to R 3.4.0
biocparallel scater written 10 months ago by nhejazi0 • updated 8 months ago by andrew.blake20
1
vote
2
answers
302
views
2
answers
0
votes
2
answers
348
views
2
answers
How does newSCESet calculate expression matrix
scater written 9 months ago by siajunren0 • updated 9 months ago by davis90
0
votes
2
answers
310
views
2
answers
problems when working with SingleCellExperiment object in scater
scater singlecellexperiment written 4 months ago by chriad10 • updated 4 months ago by davis90
5
votes
2
answers
272
views
2
answers
1
vote
2
answers
222
views
2
answers
SC3_estimate_k formatting error?
scater sc3 written 3 months ago by alexandriapinto110 • updated 11 weeks ago by Vladimir Kiselev130
0
votes
2
answers
217
views
2
answers
error when installing beachmat
scater beachmat written 10 weeks ago by j.xu30 • updated 5 weeks ago by galib3610
3
votes
1
answer
446
views
1
answer
Scran normalization error with computeSumFactors
scran scater written 13 months ago by hrishi27n0 • updated 13 months ago by Aaron Lun18k
1
vote
1
answer
382
views
1
answer
sc-RNA data analysis using scater
scater scrna written 12 months ago by hrishi27n0 • updated 12 months ago by Aaron Lun18k
2
votes
1
answer
364
views
1
answer
sc3_prepare function error
single cell single-cell scater sc3 written 12 months ago by Assa Yeroslaviz1.3k • updated 12 months ago by Vladimir Kiselev130
3
votes
1
answer
531
views
1
answer
0
votes
1
answer
398
views
1
answer
Change point size and remove outline in scater's plotPCA
rnaseq single-cell scater written 9 months ago by CodeAway20 • updated 9 months ago by James W. MacDonald45k
0
votes
1
answer
225
views
1
answer
calcAverage missing from Scater package
scater written 9 months ago by siajunren0 • updated 9 months ago by Aaron Lun18k
3
votes
1
answer
358
views
1
answer
1
vote
1
answer
592
views
1
answer
Scater normalizeExprs() batch effect
batch effect scater written 6 months ago by Jenn20 • updated 6 months ago by Aaron Lun18k
1
vote
1
answer
465
views
1
answer
Does SC3 correct counts for gene length?
rna-seq single-cell scater sc3 biclustering written 6 months ago by rmf0 • updated 5 months ago by Vladimir Kiselev130
3
votes
1
answer
238
views
1
answer
Error when merging SCESet objects
single-cell scater written 5 months ago by NathL0 • updated 5 months ago by Aaron Lun18k
3
votes
1
answer
174
views
1
answer
is SCEset fully abandoned in scran?
normalization scran scater splatter written 4 months ago by wt2150 • updated 4 months ago by davis90
0
votes
1
answer
157
views
1
answer
Error scatter when creating SingleCellExperiment
scater written 4 months ago by ines.desantiago0 • updated 4 months ago by Aaron Lun18k
0
votes
1
answer
175
views
1
answer
1
vote
1
answer
113
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 5 weeks ago by nk0 • updated 5 weeks ago by Aaron Lun18k
0
votes
1
answer
79
views
1
answer
1
vote
1
answer
106
views
1
answer
3
votes
0
answers
1.4k
views
0
answers
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