1
vote
1
answer
101
views
1
answer
rowSums() rowMeans() don't work on sparse matrix "dgCMatrix"
scran single-cell scater written 6 weeks ago by MengChun Tseng0 • updated 6 weeks ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
60
views
1
answer
Converting scater-normalized UMI data to Monocle CellDataSet
monocle scran scater umi written 8 weeks ago by supremerulersuraj0 • updated 8 weeks ago by Aaron Lun19k
5
votes
1
answer
74
views
1
answer
1
vote
1
answer
116
views
1
answer
Inserting "Biotype" into scater SCE objects
R scater sce biotype written 3 months ago by thebadpenny0 • updated 3 months ago by Aaron Lun19k
4
votes
3
answers
188
views
3
answers
Warning: negative size factors
scran scater singlecellexperiment size factor negative written 3 months ago by Marina V.V.0 • updated 3 months ago by Aaron Lun19k
1
vote
1
answer
190
views
1
answer
0
votes
1
answer
127
views
1
answer
calculateQCmetrics doesn't accept `numeric` `feature_controls` in scater 1.6.2
scater written 4 months ago by Andrew_McDavid120 • updated 4 months ago by Aaron Lun19k
1
vote
1
answer
216
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 5 months ago by nk0 • updated 5 months ago by Aaron Lun19k
0
votes
0
answers
134
views
0
answers
0
votes
1
answer
241
views
1
answer
0
votes
2
answers
360
views
2
answers
error when installing beachmat
scater beachmat written 6 months ago by j.xu30 • updated 5 months ago by galib3610
1
vote
2
answers
306
views
2
answers
SC3_estimate_k formatting error?
scater sc3 written 7 months ago by alexandriapinto110 • updated 6 months ago by Vladimir Kiselev130
5
votes
2
answers
485
views
2
answers
0
votes
1
answer
241
views
1
answer
Error scatter when creating SingleCellExperiment
scater written 7 months ago by ines.desantiago0 • updated 7 months ago by Aaron Lun19k
3
votes
1
answer
302
views
1
answer
is SCEset fully abandoned in scran?
normalization scran scater splatter written 8 months ago by wt2150 • updated 8 months ago by davis90
0
votes
2
answers
490
views
2
answers
problems when working with SingleCellExperiment object in scater
scater singlecellexperiment written 8 months ago by chriad10 • updated 8 months ago by davis90
3
votes
1
answer
339
views
1
answer
Error when merging SCESet objects
single-cell scater written 9 months ago by NathL0 • updated 9 months ago by Aaron Lun19k
1
vote
1
answer
510
views
1
answer
Does SC3 correct counts for gene length?
rna-seq single-cell scater sc3 biclustering written 10 months ago by rmf0 • updated 9 months ago by Vladimir Kiselev130
1
vote
1
answer
650
views
1
answer
Scater normalizeExprs() batch effect
batch effect scater written 10 months ago by Jenn20 • updated 10 months ago by Aaron Lun19k
3
votes
1
answer
500
views
1
answer
Sparse matrices in Bioconductor objects for single-cell analyses
workflows scater simplesinglecell written 12 months ago by sandmann.t40 • updated 12 months ago by Aaron Lun19k
0
votes
2
answers
483
views
2
answers
How does newSCESet calculate expression matrix
scater written 13 months ago by siajunren0 • updated 13 months ago by davis90
0
votes
1
answer
265
views
1
answer
calcAverage missing from Scater package
scater written 13 months ago by siajunren0 • updated 13 months ago by Aaron Lun19k
1
vote
2
answers
368
views
2
answers
0
votes
2
answers
626
views
2
answers
Change point size and remove outline in scater's plotPCA
rnaseq single-cell scater written 13 months ago by CodeAway20 • updated 10 weeks ago by angela.ubn0
0
votes
0
answers
240
views
0
answers
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