3
votes
1
answer
373
views
1
answer
Scran normalization error with computeSumFactors
scran scater written 9 months ago by hrishi27n0 • updated 9 months ago by Aaron Lun17k
1
vote
2
answers
2.0k
views
2
answers
BiocParallel/scater warning after move to R 3.4.0
biocparallel scater written 6 months ago by nhejazi0 • updated 4 months ago by andrew.blake10
1
vote
1
answer
324
views
1
answer
sc-RNA data analysis using scater
scater scrna written 9 months ago by hrishi27n0 • updated 9 months ago by Aaron Lun17k
0
votes
0
answers
155
views
0
answers
0
votes
2
answers
252
views
2
answers
How does newSCESet calculate expression matrix
scater written 5 months ago by siajunren0 • updated 5 months ago by davis90
3
votes
0
answers
1.2k
views
0
answers
2
votes
1
answer
292
views
1
answer
sc3_prepare function error
single cell single-cell scater sc3 written 9 months ago by Assa Yeroslaviz1.3k • updated 9 months ago by Vladimir Kiselev120
4
votes
3
answers
319
views
3
answers
using SC3 and scater for bulk-RNAseq
scater sc3 scrnaseq written 8 months ago by Assa Yeroslaviz1.3k • updated 8 months ago by Vladimir Kiselev120
3
votes
1
answer
386
views
1
answer
0
votes
1
answer
274
views
1
answer
Change point size and remove outline in scater's plotPCA
rnaseq single-cell scater written 6 months ago by CodeAway20 • updated 6 months ago by James W. MacDonald45k
1
vote
2
answers
253
views
2
answers
0
votes
1
answer
177
views
1
answer
calcAverage missing from Scater package
scater written 6 months ago by siajunren0 • updated 6 months ago by Aaron Lun17k
3
votes
1
answer
229
views
1
answer
1
vote
1
answer
536
views
1
answer
Scater normalizeExprs() batch effect
batch effect scater written 3 months ago by Jenn20 • updated 3 months ago by Aaron Lun17k
1
vote
1
answer
429
views
1
answer
Does SC3 correct counts for gene length?
rna-seq single-cell scater sc3 biclustering written 3 months ago by rmf0 • updated 11 weeks ago by Vladimir Kiselev120
3
votes
1
answer
176
views
1
answer
Error when merging SCESet objects
single-cell scater written 9 weeks ago by NathL0 • updated 9 weeks ago by Aaron Lun17k
0
votes
2
answers
151
views
2
answers
problems when working with SingleCellExperiment object in scater
scater singlecellexperiment written 7 weeks ago by chriad0 • updated 7 weeks ago by davis90
3
votes
1
answer
100
views
1
answer
is SCEset fully abandoned in scran?
normalization scran scater splatter written 28 days ago by wt2150 • updated 28 days ago by davis90
0
votes
1
answer
73
views
1
answer
Error scatter when creating SingleCellExperiment
scater written 24 days ago by ines.desantiago0 • updated 24 days ago by Aaron Lun17k
4
votes
2
answers
68
views
2
answers
1
vote
1
answer
70
views
1
answer
SC3_estimate_k formatting error?
scater sc3 written 5 days ago by alexandriapinto110 • updated 5 days ago by Vladimir Kiselev120
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