3
votes
1
answer
596
views
1
answer
Scran normalization error with computeSumFactors
scran scater written 20 months ago by hrishi27n0 • updated 20 months ago by Aaron Lun21k
3
votes
2
answers
3.8k
views
2
answers
BiocParallel/scater warning after move to R 3.4.0
biocparallel scater written 17 months ago by nhejazi0 • updated 15 months ago by andrew.blake30
1
vote
1
answer
560
views
1
answer
sc-RNA data analysis using scater
scater scrna written 20 months ago by hrishi27n0 • updated 20 months ago by Aaron Lun21k
0
votes
0
answers
275
views
0
answers
0
votes
2
answers
850
views
2
answers
Change point size and remove outline in scater's plotPCA
rnaseq single-cell scater written 17 months ago by CodeAway20 • updated 6 months ago by angela.ubn0
0
votes
2
answers
612
views
2
answers
How does newSCESet calculate expression matrix
scater written 16 months ago by siajunren0 • updated 16 months ago by davis90
3
votes
1
answer
350
views
1
answer
rowSums() rowMeans() don't work on sparse matrix "dgCMatrix"
scran single-cell scater written 5 months ago by MengChun Tseng10 • updated 3 months ago by Martin Morgan ♦♦ 22k
3
votes
0
answers
1.6k
views
0
answers
2
votes
1
answer
553
views
1
answer
sc3_prepare function error
single cell single-cell scater sc3 written 20 months ago by Assa Yeroslaviz1.4k • updated 20 months ago by Vladimir Kiselev130
4
votes
3
answers
620
views
3
answers
using SC3 and scater for bulk-RNAseq
scater sc3 scrnaseq written 19 months ago by Assa Yeroslaviz1.4k • updated 19 months ago by Vladimir Kiselev130
3
votes
1
answer
974
views
1
answer
1
vote
2
answers
448
views
2
answers
1
vote
1
answer
308
views
1
answer
calcAverage missing from Scater package
scater written 17 months ago by siajunren0 • updated 17 months ago by Aaron Lun21k
3
votes
1
answer
700
views
1
answer
Sparse matrices in Bioconductor objects for single-cell analyses
workflows scater simplesinglecell written 16 months ago by sandmann.t40 • updated 16 months ago by Aaron Lun21k
1
vote
1
answer
723
views
1
answer
Scater normalizeExprs() batch effect
batch effect scater written 14 months ago by Jenn20 • updated 14 months ago by Aaron Lun21k
1
vote
1
answer
564
views
1
answer
Does SC3 correct counts for gene length?
rna-seq single-cell scater sc3 biclustering written 14 months ago by rmf0 • updated 13 months ago by Vladimir Kiselev130
3
votes
1
answer
473
views
1
answer
Error when merging SCESet objects
single-cell scater written 13 months ago by NathL0 • updated 13 months ago by Aaron Lun21k
0
votes
2
answers
712
views
2
answers
problems when working with SingleCellExperiment object in scater
scater singlecellexperiment written 12 months ago by chriad10 • updated 12 months ago by davis90
3
votes
1
answer
506
views
1
answer
is SCEset fully abandoned in scran?
normalization scran scater splatter written 11 months ago by wt2150 • updated 11 months ago by davis90
0
votes
1
answer
315
views
1
answer
Error scatter when creating SingleCellExperiment
scater written 11 months ago by ines.desantiago0 • updated 11 months ago by Aaron Lun21k
5
votes
2
answers
816
views
2
answers
Raw count data for SC3 and SingleCellExperiment set problem
scater sc3 singlecellexperiment written 11 months ago by chengyuzou10 • updated 11 months ago by Vladimir Kiselev130
1
vote
2
answers
404
views
2
answers
SC3_estimate_k formatting error?
scater sc3 written 11 months ago by alexandriapinto110 • updated 10 months ago by Vladimir Kiselev130
0
votes
2
answers
477
views
2
answers
error when installing beachmat
scater beachmat written 10 months ago by j.xu30 • updated 9 months ago by galib3610
0
votes
1
answer
322
views
1
answer
0
votes
0
answers
188
views
0
answers
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