0
votes
1
answer
33
views
1
answer
Top variable features used by 'runPCA' in scater
pca scater features written 9 hours ago by jws0 • updated 7 hours ago by Aaron Lun21k
2
votes
1
answer
39
views
1
answer
plotPlatePosition and plate_position
R scater singlecellexperiment written 2 days ago by TJ0 • updated 2 days ago by Aaron Lun21k
0
votes
1
answer
58
views
1
answer
Problem installing scater
R bioconductor scater biocmanager written 5 days ago by hfberg0 • updated 5 days ago by Aaron Lun21k
2
votes
1
answer
78
views
1
answer
Change the number of clusters with scater
clustering scran scater scrnaseq written 22 days ago by shbrief10 • updated 22 days ago by Aaron Lun21k
1
vote
1
answer
123
views
1
answer
0
votes
1
answer
234
views
1
answer
Scater package PlotExpression
scater written 4 months ago by mayank.geit890
0
votes
1
answer
102
views
1
answer
RNAseq scater error in plotQC()
scater scrnaseq plotqc written 4 months ago by Vladimir Krasikov90 • updated 4 months ago by Aaron Lun21k
3
votes
1
answer
512
views
1
answer
rowSums() rowMeans() don't work on sparse matrix "dgCMatrix"
scran single-cell scater written 7 months ago by MengChun Tseng10 • updated 5 months ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
150
views
1
answer
Converting scater-normalized UMI data to Monocle CellDataSet
monocle scran scater umi written 7 months ago by supremerulersuraj0 • updated 7 months ago by Aaron Lun21k
5
votes
1
answer
153
views
1
answer
0
votes
2
answers
1.0k
views
2
answers
Change point size and remove outline in scater's plotPCA
rnaseq single-cell scater written 19 months ago by CodeAway30 • updated 8 months ago by angela.ubn0
1
vote
1
answer
192
views
1
answer
Inserting "Biotype" into scater SCE objects
R scater sce biotype written 9 months ago by thebadpenny0 • updated 9 months ago by Aaron Lun21k
4
votes
3
answers
576
views
3
answers
Warning: negative size factors
scran scater singlecellexperiment size factor negative written 9 months ago by Marina V.V.0 • updated 9 months ago by Aaron Lun21k
1
vote
1
answer
330
views
1
answer
0
votes
1
answer
215
views
1
answer
calculateQCmetrics doesn't accept `numeric` `feature_controls` in scater 1.6.2
scater written 10 months ago by Andrew_McDavid150 • updated 10 months ago by Aaron Lun21k
0
votes
2
answers
531
views
2
answers
error when installing beachmat
scater beachmat written 12 months ago by j.xu30 • updated 10 months ago by galib3610
1
vote
1
answer
349
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 10 months ago by nk0 • updated 10 months ago by Aaron Lun21k
0
votes
0
answers
209
views
0
answers
0
votes
1
answer
380
views
1
answer
1
vote
2
answers
470
views
2
answers
SC3_estimate_k formatting error?
scater sc3 written 13 months ago by alexandriapinto110 • updated 12 months ago by Vladimir Kiselev130
5
votes
2
answers
971
views
2
answers
Raw count data for SC3 and SingleCellExperiment set problem
scater sc3 singlecellexperiment written 13 months ago by chengyuzou10 • updated 13 months ago by Vladimir Kiselev130
0
votes
1
answer
367
views
1
answer
Error scatter when creating SingleCellExperiment
scater written 13 months ago by ines.desantiago0 • updated 13 months ago by Aaron Lun21k
3
votes
1
answer
587
views
1
answer
is SCEset fully abandoned in scran?
normalization scran scater splatter written 13 months ago by wt2150 • updated 13 months ago by davis90
0
votes
2
answers
836
views
2
answers
problems when working with SingleCellExperiment object in scater
scater singlecellexperiment written 14 months ago by chriad10 • updated 14 months ago by davis90
3
votes
1
answer
539
views
1
answer
Error when merging SCESet objects
single-cell scater written 15 months ago by NathL0 • updated 15 months ago by Aaron Lun21k
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