1
vote
1
answer
56
views
1
answer
0
votes
1
answer
152
views
1
answer
Scater package PlotExpression
scater written 9 weeks ago by mayank.geit890
0
votes
1
answer
61
views
1
answer
RNAseq scater error in plotQC()
scater scrnaseq plotqc written 11 weeks ago by Vladimir Krasikov90 • updated 11 weeks ago by Aaron Lun21k
3
votes
1
answer
347
views
1
answer
rowSums() rowMeans() don't work on sparse matrix "dgCMatrix"
scran single-cell scater written 5 months ago by MengChun Tseng10 • updated 3 months ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
115
views
1
answer
Converting scater-normalized UMI data to Monocle CellDataSet
monocle scran scater umi written 5 months ago by supremerulersuraj0 • updated 5 months ago by Aaron Lun21k
5
votes
1
answer
121
views
1
answer
0
votes
2
answers
850
views
2
answers
Change point size and remove outline in scater's plotPCA
rnaseq single-cell scater written 17 months ago by CodeAway20 • updated 6 months ago by angela.ubn0
1
vote
1
answer
158
views
1
answer
Inserting "Biotype" into scater SCE objects
R scater sce biotype written 7 months ago by thebadpenny0 • updated 7 months ago by Aaron Lun21k
4
votes
3
answers
416
views
3
answers
Warning: negative size factors
scran scater singlecellexperiment size factor negative written 7 months ago by Marina V.V.0 • updated 7 months ago by Aaron Lun21k
1
vote
1
answer
277
views
1
answer
0
votes
1
answer
176
views
1
answer
calculateQCmetrics doesn't accept `numeric` `feature_controls` in scater 1.6.2
scater written 8 months ago by Andrew_McDavid150 • updated 8 months ago by Aaron Lun21k
0
votes
2
answers
477
views
2
answers
error when installing beachmat
scater beachmat written 10 months ago by j.xu30 • updated 8 months ago by galib3610
1
vote
1
answer
298
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 9 months ago by nk0 • updated 9 months ago by Aaron Lun21k
0
votes
0
answers
188
views
0
answers
0
votes
1
answer
320
views
1
answer
1
vote
2
answers
403
views
2
answers
SC3_estimate_k formatting error?
scater sc3 written 11 months ago by alexandriapinto110 • updated 10 months ago by Vladimir Kiselev130
5
votes
2
answers
805
views
2
answers
Raw count data for SC3 and SingleCellExperiment set problem
scater sc3 singlecellexperiment written 11 months ago by chengyuzou10 • updated 11 months ago by Vladimir Kiselev130
0
votes
1
answer
315
views
1
answer
Error scatter when creating SingleCellExperiment
scater written 11 months ago by ines.desantiago0 • updated 11 months ago by Aaron Lun21k
3
votes
1
answer
504
views
1
answer
is SCEset fully abandoned in scran?
normalization scran scater splatter written 11 months ago by wt2150 • updated 11 months ago by davis90
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