3
votes
2
answers
4.0k
views
2
answers
BiocParallel/scater warning after move to R 3.4.0
biocparallel scater written 19 months ago by nhejazi0 • updated 17 months ago by andrew.blake30
3
votes
0
answers
1.7k
views
0
answers
3
votes
1
answer
1.1k
views
1
answer
0
votes
2
answers
1.0k
views
2
answers
Change point size and remove outline in scater's plotPCA
rnaseq single-cell scater written 19 months ago by CodeAway30 • updated 8 months ago by angela.ubn0
5
votes
2
answers
974
views
2
answers
Raw count data for SC3 and SingleCellExperiment set problem
scater sc3 singlecellexperiment written 13 months ago by chengyuzou10 • updated 13 months ago by Vladimir Kiselev130
0
votes
2
answers
840
views
2
answers
problems when working with SingleCellExperiment object in scater
scater singlecellexperiment written 14 months ago by chriad10 • updated 14 months ago by davis90
3
votes
1
answer
778
views
1
answer
Sparse matrices in Bioconductor objects for single-cell analyses
workflows scater simplesinglecell written 18 months ago by sandmann.t40 • updated 18 months ago by Aaron Lun21k
1
vote
1
answer
762
views
1
answer
Scater normalizeExprs() batch effect
batch effect scater written 16 months ago by Jenn20 • updated 16 months ago by Aaron Lun21k
0
votes
2
answers
714
views
2
answers
How does newSCESet calculate expression matrix
scater written 18 months ago by siajunren0 • updated 18 months ago by davis90
4
votes
3
answers
671
views
3
answers
using SC3 and scater for bulk-RNAseq
scater sc3 scrnaseq written 21 months ago by Assa Yeroslaviz1.4k • updated 21 months ago by Vladimir Kiselev130
3
votes
1
answer
659
views
1
answer
Scran normalization error with computeSumFactors
scran scater written 22 months ago by hrishi27n0 • updated 22 months ago by Aaron Lun21k
2
votes
1
answer
596
views
1
answer
sc3_prepare function error
single cell single-cell scater sc3 written 22 months ago by Assa Yeroslaviz1.4k • updated 22 months ago by Vladimir Kiselev130
1
vote
1
answer
593
views
1
answer
sc-RNA data analysis using scater
scater scrna written 22 months ago by hrishi27n0 • updated 22 months ago by Aaron Lun21k
3
votes
1
answer
592
views
1
answer
is SCEset fully abandoned in scran?
normalization scran scater splatter written 13 months ago by wt2150 • updated 13 months ago by davis90
1
vote
1
answer
589
views
1
answer
Does SC3 correct counts for gene length?
rna-seq single-cell scater sc3 biclustering written 16 months ago by rmf10 • updated 15 months ago by Vladimir Kiselev130
4
votes
3
answers
581
views
3
answers
Warning: negative size factors
scran scater singlecellexperiment size factor negative written 9 months ago by Marina V.V.0 • updated 9 months ago by Aaron Lun21k
3
votes
1
answer
542
views
1
answer
Error when merging SCESet objects
single-cell scater written 15 months ago by NathL0 • updated 15 months ago by Aaron Lun21k
0
votes
2
answers
534
views
2
answers
error when installing beachmat
scater beachmat written 12 months ago by j.xu30 • updated 10 months ago by galib3610
3
votes
1
answer
519
views
1
answer
rowSums() rowMeans() don't work on sparse matrix "dgCMatrix"
scran single-cell scater written 7 months ago by MengChun Tseng10 • updated 5 months ago by Martin Morgan ♦♦ 22k
1
vote
2
answers
481
views
2
answers
1
vote
2
answers
474
views
2
answers
SC3_estimate_k formatting error?
scater sc3 written 13 months ago by alexandriapinto110 • updated 12 months ago by Vladimir Kiselev130
0
votes
1
answer
382
views
1
answer
0
votes
1
answer
369
views
1
answer
Error scatter when creating SingleCellExperiment
scater written 13 months ago by ines.desantiago0 • updated 13 months ago by Aaron Lun21k
1
vote
1
answer
350
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 11 months ago by nk0 • updated 11 months ago by Aaron Lun21k
1
vote
1
answer
336
views
1
answer
calcAverage missing from Scater package
scater written 19 months ago by siajunren0 • updated 19 months ago by Aaron Lun21k
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