3
votes
0
answers
1.4k
views
0
answers
2
votes
1
answer
416
views
1
answer
sc3_prepare function error
single cell single-cell scater sc3 written 14 months ago by Assa Yeroslaviz1.4k • updated 14 months ago by Vladimir Kiselev130
4
votes
3
answers
467
views
3
answers
using SC3 and scater for bulk-RNAseq
scater sc3 scrnaseq written 13 months ago by Assa Yeroslaviz1.4k • updated 13 months ago by Vladimir Kiselev130
3
votes
1
answer
641
views
1
answer
5
votes
2
answers
359
views
2
answers
1
vote
2
answers
255
views
2
answers
SC3_estimate_k formatting error?
scater sc3 written 5 months ago by alexandriapinto110 • updated 4 months ago by Vladimir Kiselev130
3
votes
1
answer
494
views
1
answer
Scran normalization error with computeSumFactors
scran scater written 14 months ago by hrishi27n0 • updated 14 months ago by Aaron Lun19k
1
vote
1
answer
432
views
1
answer
sc-RNA data analysis using scater
scater scrna written 14 months ago by hrishi27n0 • updated 14 months ago by Aaron Lun19k
3
votes
2
answers
2.8k
views
2
answers
BiocParallel/scater warning after move to R 3.4.0
biocparallel scater written 12 months ago by nhejazi0 • updated 9 months ago by andrew.blake30
0
votes
0
answers
213
views
0
answers
0
votes
2
answers
499
views
2
answers
Change point size and remove outline in scater's plotPCA
rnaseq single-cell scater written 11 months ago by CodeAway20 • updated 11 days ago by angela.ubn0
1
vote
2
answers
328
views
2
answers
0
votes
1
answer
238
views
1
answer
calcAverage missing from Scater package
scater written 11 months ago by siajunren0 • updated 11 months ago by Aaron Lun19k
0
votes
2
answers
389
views
2
answers
How does newSCESet calculate expression matrix
scater written 11 months ago by siajunren0 • updated 11 months ago by davis90
3
votes
1
answer
418
views
1
answer
Sparse matrices in Bioconductor objects for single-cell analyses
workflows scater simplesinglecell written 10 months ago by sandmann.t20 • updated 10 months ago by Aaron Lun19k
1
vote
1
answer
609
views
1
answer
Scater normalizeExprs() batch effect
batch effect scater written 8 months ago by Jenn20 • updated 8 months ago by Aaron Lun19k
1
vote
1
answer
483
views
1
answer
Does SC3 correct counts for gene length?
rna-seq single-cell scater sc3 biclustering written 8 months ago by rmf0 • updated 7 months ago by Vladimir Kiselev130
3
votes
1
answer
281
views
1
answer
Error when merging SCESet objects
single-cell scater written 7 months ago by NathL0 • updated 7 months ago by Aaron Lun19k
0
votes
2
answers
382
views
2
answers
problems when working with SingleCellExperiment object in scater
scater singlecellexperiment written 6 months ago by chriad10 • updated 6 months ago by davis90
3
votes
1
answer
213
views
1
answer
is SCEset fully abandoned in scran?
normalization scran scater splatter written 6 months ago by wt2150 • updated 6 months ago by davis90
0
votes
1
answer
196
views
1
answer
Error scatter when creating SingleCellExperiment
scater written 5 months ago by ines.desantiago0 • updated 5 months ago by Aaron Lun19k
0
votes
2
answers
296
views
2
answers
error when installing beachmat
scater beachmat written 4 months ago by j.xu30 • updated 3 months ago by galib3610
0
votes
1
answer
201
views
1
answer
0
votes
0
answers
108
views
0
answers
1
vote
1
answer
162
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 3 months ago by nk0 • updated 3 months ago by Aaron Lun19k
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