3
votes
0
answers
1.5k
views
0
answers
2
votes
1
answer
480
views
1
answer
sc3_prepare function error
single cell single-cell scater sc3 written 17 months ago by Assa Yeroslaviz1.4k • updated 17 months ago by Vladimir Kiselev130
4
votes
3
answers
538
views
3
answers
using SC3 and scater for bulk-RNAseq
scater sc3 scrnaseq written 16 months ago by Assa Yeroslaviz1.4k • updated 16 months ago by Vladimir Kiselev130
3
votes
1
answer
811
views
1
answer
5
votes
2
answers
548
views
2
answers
1
vote
2
answers
326
views
2
answers
SC3_estimate_k formatting error?
scater sc3 written 8 months ago by alexandriapinto110 • updated 7 months ago by Vladimir Kiselev130
3
votes
1
answer
152
views
1
answer
rowSums() rowMeans() don't work on sparse matrix "dgCMatrix"
scran single-cell scater written 11 weeks ago by MengChun Tseng10 • updated 21 days ago by Martin Morgan ♦♦ 22k
3
votes
1
answer
542
views
1
answer
Scran normalization error with computeSumFactors
scran scater written 17 months ago by hrishi27n0 • updated 17 months ago by Aaron Lun20k
1
vote
1
answer
497
views
1
answer
sc-RNA data analysis using scater
scater scrna written 17 months ago by hrishi27n0 • updated 17 months ago by Aaron Lun20k
3
votes
2
answers
3.3k
views
2
answers
BiocParallel/scater warning after move to R 3.4.0
biocparallel scater written 15 months ago by nhejazi0 • updated 12 months ago by andrew.blake30
0
votes
0
answers
249
views
0
answers
0
votes
2
answers
675
views
2
answers
Change point size and remove outline in scater's plotPCA
rnaseq single-cell scater written 14 months ago by CodeAway20 • updated 3 months ago by angela.ubn0
1
vote
2
answers
385
views
2
answers
0
votes
1
answer
270
views
1
answer
calcAverage missing from Scater package
scater written 14 months ago by siajunren0 • updated 14 months ago by Aaron Lun20k
0
votes
2
answers
508
views
2
answers
How does newSCESet calculate expression matrix
scater written 14 months ago by siajunren0 • updated 14 months ago by davis90
3
votes
1
answer
537
views
1
answer
Sparse matrices in Bioconductor objects for single-cell analyses
workflows scater simplesinglecell written 13 months ago by sandmann.t40 • updated 13 months ago by Aaron Lun20k
1
vote
1
answer
670
views
1
answer
Scater normalizeExprs() batch effect
batch effect scater written 11 months ago by Jenn20 • updated 11 months ago by Aaron Lun20k
1
vote
1
answer
522
views
1
answer
Does SC3 correct counts for gene length?
rna-seq single-cell scater sc3 biclustering written 11 months ago by rmf0 • updated 10 months ago by Vladimir Kiselev130
3
votes
1
answer
365
views
1
answer
Error when merging SCESet objects
single-cell scater written 10 months ago by NathL0 • updated 10 months ago by Aaron Lun20k
0
votes
2
answers
528
views
2
answers
problems when working with SingleCellExperiment object in scater
scater singlecellexperiment written 9 months ago by chriad10 • updated 9 months ago by davis90
3
votes
1
answer
355
views
1
answer
is SCEset fully abandoned in scran?
normalization scran scater splatter written 9 months ago by wt2150 • updated 9 months ago by davis90
0
votes
1
answer
253
views
1
answer
Error scatter when creating SingleCellExperiment
scater written 8 months ago by ines.desantiago0 • updated 8 months ago by Aaron Lun20k
0
votes
2
answers
383
views
2
answers
error when installing beachmat
scater beachmat written 7 months ago by j.xu30 • updated 6 months ago by galib3610
0
votes
1
answer
259
views
1
answer
0
votes
0
answers
144
views
0
answers
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