0
votes
3
answers
627
views
3
answers
4
votes
3
answers
364
views
3
answers
Warning: negative size factors
scran scater singlecellexperiment size factor negative written 6 months ago by Marina V.V.0 • updated 6 months ago by Aaron Lun21k
1
vote
2
answers
1.2k
views
2
answers
1
vote
2
answers
485
views
2
answers
0
votes
2
answers
327
views
2
answers
scran::trendVar throwing error
scran written 9 months ago by zhalehsafikhani0
1
vote
2
answers
170
views
2
answers
3
votes
1
answer
664
views
1
answer
Using Scran normalization with in edgeR
edger sizefactors estimatedisp scran written 2.2 years ago by mnaymik10 • updated 2.2 years ago by Aaron Lun21k
0
votes
1
answer
403
views
1
answer
3
votes
1
answer
575
views
1
answer
Scran normalization error with computeSumFactors
scran scater written 20 months ago by hrishi27n0 • updated 20 months ago by Aaron Lun21k
3
votes
1
answer
915
views
1
answer
3
votes
1
answer
246
views
1
answer
Normalizing vs RNA content in scRNAseq data
monocle scran written 14 months ago by ankur.chakravarthy.1020 • updated 14 months ago by Aaron Lun21k
0
votes
1
answer
966
views
1
answer
3
votes
1
answer
604
views
1
answer
2
votes
1
answer
416
views
1
answer
Scran functions not found
scran single-cell written 12 months ago by alva.james0 • updated 12 months ago by Aaron Lun21k
0
votes
1
answer
541
views
1
answer
RNA-Seq Batch correction negative values
sva combat rna-seq scran batch-effect written 12 months ago by rmf0 • updated 12 months ago by Aaron Lun21k
1
vote
1
answer
235
views
1
answer
Missing design when using Scran to create a DESeqDataSet
deseq2 scran written 11 months ago by berry140 • updated 11 months ago by Aaron Lun21k
3
votes
1
answer
468
views
1
answer
is SCEset fully abandoned in scran?
normalization scran scater splatter written 11 months ago by wt2150 • updated 11 months ago by davis90
2
votes
1
answer
205
views
1
answer
scran: trendVar() / lm.fit() fails in single-cell RNAseq experiment
scran written 8 months ago by roman.hillje0 • updated 8 months ago by Aaron Lun21k
1
vote
1
answer
284
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 8 months ago by nk0 • updated 8 months ago by Aaron Lun21k
6
votes
1
answer
520
views
1
answer
Downstream analysis after using mnnCorrect()
scran mnncorrect written 7 months ago by Dave Tang210 • updated 7 months ago by Aaron Lun21k
0
votes
1
answer
102
views
1
answer
Converting scater-normalized UMI data to Monocle CellDataSet
monocle scran scater umi written 5 months ago by supremerulersuraj0 • updated 5 months ago by Aaron Lun21k
3
votes
1
answer
271
views
1
answer
rowSums() rowMeans() don't work on sparse matrix "dgCMatrix"
scran single-cell scater written 4 months ago by MengChun Tseng10 • updated 12 weeks ago by Martin Morgan ♦♦ 22k
6
votes
1
answer
203
views
1
answer
1
vote
1
answer
117
views
1
answer
1
vote
1
answer
91
views
1
answer
SCRAN - Question: Error when calling cosineNorm through fastMNN
scran mnncorrect fastmnn written 9 weeks ago by tobi0 • updated 9 weeks ago by Aaron Lun21k
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