1
vote
1
answer
76
views
1
answer
rowSums() rowMeans() don't work on sparse matrix "dgCMatrix"
scran single-cell scater written 22 days ago by MengChun Tseng0 • updated 22 days ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
44
views
1
answer
Converting scater-normalized UMI data to Monocle CellDataSet
monocle scran scater umi written 4 weeks ago by supremerulersuraj0 • updated 4 weeks ago by Aaron Lun19k
1
vote
2
answers
120
views
2
answers
4
votes
3
answers
159
views
3
answers
Warning: negative size factors
scran scater singlecellexperiment size factor negative written 12 weeks ago by Marina V.V.0 • updated 12 weeks ago by Aaron Lun19k
5
votes
1
answer
226
views
1
answer
Downstream analysis after using mnnCorrect()
scran mnncorrect written 3 months ago by Dave Tang210 • updated 3 months ago by Aaron Lun19k
1
vote
1
answer
190
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 4 months ago by nk0 • updated 4 months ago by Aaron Lun19k
2
votes
1
answer
129
views
1
answer
scran: trendVar() / lm.fit() fails in single-cell RNAseq experiment
scran written 4 months ago by roman.hillje0 • updated 4 months ago by Aaron Lun19k
0
votes
2
answers
224
views
2
answers
scran::trendVar throwing error
scran written 5 months ago by zhalehsafikhani0
3
votes
1
answer
243
views
1
answer
is SCEset fully abandoned in scran?
normalization scran scater splatter written 7 months ago by wt2150 • updated 7 months ago by davis90
1
vote
1
answer
177
views
1
answer
Missing design when using Scran to create a DESeqDataSet
deseq2 scran written 7 months ago by berry140 • updated 7 months ago by Aaron Lun19k
0
votes
1
answer
314
views
1
answer
RNA-Seq Batch correction negative values
sva combat rna-seq scran batch-effect written 8 months ago by rmf0 • updated 8 months ago by Aaron Lun19k
2
votes
1
answer
368
views
1
answer
Scran functions not found
scran single-cell written 8 months ago by alva.james0 • updated 8 months ago by Aaron Lun19k
3
votes
1
answer
516
views
1
answer
0
votes
1
answer
789
views
1
answer
3
votes
1
answer
193
views
1
answer
Normalizing vs RNA content in scRNAseq data
monocle scran written 10 months ago by ankur.chakravarthy.1010 • updated 10 months ago by Aaron Lun19k
3
votes
1
answer
686
views
1
answer
3
votes
1
answer
518
views
1
answer
Scran normalization error with computeSumFactors
scran scater written 16 months ago by hrishi27n0 • updated 16 months ago by Aaron Lun19k
3
votes
0
answers
1.5k
views
0
answers
1
vote
2
answers
419
views
2
answers
0
votes
1
answer
352
views
1
answer
0
votes
3
answers
542
views
3
answers
3
votes
1
answer
589
views
1
answer
Using Scran normalization with in edgeR
edger sizefactors estimatedisp scran written 22 months ago by mnaymik10 • updated 22 months ago by Aaron Lun19k
1
vote
2
answers
1.1k
views
2
answers
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