3
votes
1
answer
86
views
1
answer
Downstream analysis after using mnnCorrect()
scran mnncorrect written 3 days ago by Dave Tang210 • updated 3 days ago by Aaron Lun18k
1
vote
1
answer
106
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 4 weeks ago by nk0 • updated 4 weeks ago by Aaron Lun18k
2
votes
1
answer
77
views
1
answer
scran: trendVar() / lm.fit() fails in single-cell RNAseq experiment
scran written 5 weeks ago by roman.hillje0 • updated 5 weeks ago by Aaron Lun18k
0
votes
2
answers
142
views
2
answers
scran::trendVar throwing error
scran written 10 weeks ago by zhalehsafikhani0
3
votes
1
answer
168
views
1
answer
is SCEset fully abandoned in scran?
normalization scran scater splatter written 3 months ago by wt2150 • updated 3 months ago by davis90
1
vote
1
answer
133
views
1
answer
Missing design when using Scran to create a DESeqDataSet
deseq2 scran written 4 months ago by berry140 • updated 4 months ago by Aaron Lun18k
0
votes
1
answer
214
views
1
answer
RNA-Seq Batch correction negative values
sva combat rna-seq scran batch-effect written 4 months ago by rmf0 • updated 4 months ago by Aaron Lun18k
2
votes
1
answer
341
views
1
answer
Scran functions not found
scran single-cell written 5 months ago by alva.james0 • updated 5 months ago by Aaron Lun18k
3
votes
1
answer
460
views
1
answer
0
votes
1
answer
658
views
1
answer
3
votes
1
answer
151
views
1
answer
Normalizing vs RNA content in scRNAseq data
monocle scran written 7 months ago by ankur.chakravarthy.1010 • updated 7 months ago by Aaron Lun18k
3
votes
1
answer
506
views
1
answer
3
votes
1
answer
439
views
1
answer
Scran normalization error with computeSumFactors
scran scater written 12 months ago by hrishi27n0 • updated 12 months ago by Aaron Lun18k
3
votes
0
answers
1.3k
views
0
answers
1
vote
2
answers
357
views
2
answers
0
votes
1
answer
320
views
1
answer
0
votes
3
answers
459
views
3
answers
3
votes
1
answer
505
views
1
answer
Using Scran normalization with in edgeR
edger sizefactors estimatedisp scran written 19 months ago by mnaymik10 • updated 19 months ago by Aaron Lun18k
1
vote
2
answers
912
views
2
answers
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