0
votes
1
answer
31
views
1
answer
How to resolve these trendVar() warnings and errors
scran scater singlecellexperiment written 3 days ago by Abhishek Singh20 • updated 2 days ago by Aaron Lun21k
2
votes
1
answer
75
views
1
answer
2
votes
1
answer
81
views
1
answer
Change the number of clusters with scater
clustering scran scater scrnaseq written 26 days ago by shbrief10 • updated 26 days ago by Aaron Lun21k
0
votes
1
answer
133
views
1
answer
Error of makeTechTrend() of Scran
scran single-cell seq.default written 4 months ago by Guangshuai Jia0 • updated 4 months ago by Aaron Lun21k
1
vote
1
answer
110
views
1
answer
Adjust number of clusters with scran/buildSNNGraph
scran single-cell buildsnngraph cluster_walktrap written 4 months ago by tobi0 • updated 4 months ago by Aaron Lun21k
1
vote
1
answer
181
views
1
answer
SCRAN - Question: Error when calling cosineNorm through fastMNN
scran mnncorrect fastmnn written 5 months ago by tobi0 • updated 5 months ago by Aaron Lun21k
1
vote
1
answer
184
views
1
answer
6
votes
1
answer
357
views
1
answer
3
votes
1
answer
526
views
1
answer
rowSums() rowMeans() don't work on sparse matrix "dgCMatrix"
scran single-cell scater written 7 months ago by MengChun Tseng10 • updated 5 months ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
155
views
1
answer
Converting scater-normalized UMI data to Monocle CellDataSet
monocle scran scater umi written 7 months ago by supremerulersuraj0 • updated 7 months ago by Aaron Lun21k
1
vote
2
answers
204
views
2
answers
4
votes
3
answers
588
views
3
answers
Warning: negative size factors
scran scater singlecellexperiment size factor negative written 9 months ago by Marina V.V.0 • updated 9 months ago by Aaron Lun21k
6
votes
1
answer
750
views
1
answer
Downstream analysis after using mnnCorrect()
scran mnncorrect written 10 months ago by Dave Tang210 • updated 10 months ago by Aaron Lun21k
1
vote
1
answer
352
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 11 months ago by nk0 • updated 11 months ago by Aaron Lun21k
2
votes
1
answer
284
views
1
answer
scran: trendVar() / lm.fit() fails in single-cell RNAseq experiment
scran written 11 months ago by roman.hillje0 • updated 11 months ago by Aaron Lun21k
0
votes
2
answers
419
views
2
answers
scran::trendVar throwing error
scran written 12 months ago by zhalehsafikhani0
3
votes
1
answer
596
views
1
answer
is SCEset fully abandoned in scran?
normalization scran scater splatter written 13 months ago by wt2150 • updated 13 months ago by davis90
1
vote
1
answer
314
views
1
answer
Missing design when using Scran to create a DESeqDataSet
deseq2 scran written 14 months ago by berry140 • updated 14 months ago by Aaron Lun21k
1
vote
1
answer
749
views
1
answer
RNA-Seq Batch correction negative values
sva combat rna-seq scran batch-effect written 14 months ago by rmf10 • updated 14 months ago by Aaron Lun21k
2
votes
1
answer
466
views
1
answer
Scran functions not found
scran single-cell written 15 months ago by alva.james0 • updated 15 months ago by Aaron Lun21k
3
votes
1
answer
674
views
1
answer
0
votes
1
answer
1.1k
views
1
answer
3
votes
1
answer
299
views
1
answer
Normalizing vs RNA content in scRNAseq data
monocle scran written 17 months ago by ankur.chakravarthy.1020 • updated 17 months ago by Aaron Lun21k
3
votes
1
answer
1.1k
views
1
answer
3
votes
1
answer
661
views
1
answer
Scran normalization error with computeSumFactors
scran scater written 22 months ago by hrishi27n0 • updated 22 months ago by Aaron Lun21k
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