3
votes
1
answer
537
views
1
answer
Scran normalization error with computeSumFactors
scran scater written 16 months ago by hrishi27n0 • updated 16 months ago by Aaron Lun19k
1
vote
2
answers
437
views
2
answers
3
votes
1
answer
207
views
1
answer
Normalizing vs RNA content in scRNAseq data
monocle scran written 11 months ago by ankur.chakravarthy.1010 • updated 11 months ago by Aaron Lun19k
3
votes
1
answer
535
views
1
answer
5
votes
1
answer
289
views
1
answer
Downstream analysis after using mnnCorrect()
scran mnncorrect written 4 months ago by Dave Tang210 • updated 4 months ago by Aaron Lun19k
1
vote
2
answers
1.1k
views
2
answers
3
votes
1
answer
615
views
1
answer
Using Scran normalization with in edgeR
edger sizefactors estimatedisp scran written 23 months ago by mnaymik10 • updated 23 months ago by Aaron Lun19k
0
votes
3
answers
556
views
3
answers
0
votes
1
answer
368
views
1
answer
3
votes
0
answers
1.5k
views
0
answers
3
votes
1
answer
752
views
1
answer
0
votes
1
answer
844
views
1
answer
2
votes
1
answer
383
views
1
answer
Scran functions not found
scran single-cell written 9 months ago by alva.james0 • updated 9 months ago by Aaron Lun19k
0
votes
1
answer
370
views
1
answer
RNA-Seq Batch correction negative values
sva combat rna-seq scran batch-effect written 8 months ago by rmf0 • updated 8 months ago by Aaron Lun19k
1
vote
1
answer
192
views
1
answer
Missing design when using Scran to create a DESeqDataSet
deseq2 scran written 8 months ago by berry140 • updated 8 months ago by Aaron Lun19k
3
votes
1
answer
305
views
1
answer
is SCEset fully abandoned in scran?
normalization scran scater splatter written 8 months ago by wt2150 • updated 8 months ago by davis90
0
votes
2
answers
251
views
2
answers
scran::trendVar throwing error
scran written 6 months ago by zhalehsafikhani0
2
votes
1
answer
156
views
1
answer
scran: trendVar() / lm.fit() fails in single-cell RNAseq experiment
scran written 5 months ago by roman.hillje0 • updated 5 months ago by Aaron Lun19k
1
vote
1
answer
217
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 5 months ago by nk0 • updated 5 months ago by Aaron Lun19k
4
votes
3
answers
189
views
3
answers
Warning: negative size factors
scran scater singlecellexperiment size factor negative written 3 months ago by Marina V.V.0 • updated 3 months ago by Aaron Lun19k
1
vote
2
answers
138
views
2
answers
0
votes
1
answer
61
views
1
answer
Converting scater-normalized UMI data to Monocle CellDataSet
monocle scran scater umi written 8 weeks ago by supremerulersuraj0 • updated 8 weeks ago by Aaron Lun19k
1
vote
1
answer
107
views
1
answer
rowSums() rowMeans() don't work on sparse matrix "dgCMatrix"
scran single-cell scater written 7 weeks ago by MengChun Tseng0 • updated 7 weeks ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
26
views
1
answer
<prev • 24 results • page 1 of 1 • next >

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 132 users visited in the last hour