0
votes
1
answer
85
views
1
answer
Error of makeTechTrend() of Scran
scran single-cell seq.default written 8 weeks ago by Guangshuai Jia0 • updated 8 weeks ago by Aaron Lun21k
1
vote
1
answer
67
views
1
answer
Adjust number of clusters with scran/buildSNNGraph
scran single-cell buildsnngraph cluster_walktrap written 11 weeks ago by tobi0 • updated 11 weeks ago by Aaron Lun21k
1
vote
1
answer
124
views
1
answer
SCRAN - Question: Error when calling cosineNorm through fastMNN
scran mnncorrect fastmnn written 3 months ago by tobi0 • updated 3 months ago by Aaron Lun21k
1
vote
1
answer
133
views
1
answer
3
votes
1
answer
351
views
1
answer
rowSums() rowMeans() don't work on sparse matrix "dgCMatrix"
scran single-cell scater written 5 months ago by MengChun Tseng10 • updated 3 months ago by Martin Morgan ♦♦ 22k
6
votes
1
answer
254
views
1
answer
0
votes
1
answer
116
views
1
answer
Converting scater-normalized UMI data to Monocle CellDataSet
monocle scran scater umi written 5 months ago by supremerulersuraj0 • updated 5 months ago by Aaron Lun21k
1
vote
2
answers
181
views
2
answers
4
votes
3
answers
434
views
3
answers
Warning: negative size factors
scran scater singlecellexperiment size factor negative written 7 months ago by Marina V.V.0 • updated 7 months ago by Aaron Lun21k
6
votes
1
answer
597
views
1
answer
Downstream analysis after using mnnCorrect()
scran mnncorrect written 8 months ago by Dave Tang210 • updated 8 months ago by Aaron Lun21k
1
vote
1
answer
300
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 9 months ago by nk0 • updated 9 months ago by Aaron Lun21k
2
votes
1
answer
230
views
1
answer
scran: trendVar() / lm.fit() fails in single-cell RNAseq experiment
scran written 9 months ago by roman.hillje0 • updated 9 months ago by Aaron Lun21k
0
votes
2
answers
351
views
2
answers
scran::trendVar throwing error
scran written 10 months ago by zhalehsafikhani0
3
votes
1
answer
507
views
1
answer
is SCEset fully abandoned in scran?
normalization scran scater splatter written 12 months ago by wt2150 • updated 12 months ago by davis90
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