1
vote
1
answer
38
views
1
answer
SCRAN - Question: Error when calling cosineNorm through fastMNN
scran mnncorrect fastmnn written 2 days ago by tobi0 • updated 2 days ago by Aaron Lun20k
1
vote
1
answer
45
views
1
answer
3
votes
1
answer
151
views
1
answer
rowSums() rowMeans() don't work on sparse matrix "dgCMatrix"
scran single-cell scater written 10 weeks ago by MengChun Tseng10 • updated 19 days ago by Martin Morgan ♦♦ 22k
6
votes
1
answer
120
views
1
answer
0
votes
1
answer
74
views
1
answer
Converting scater-normalized UMI data to Monocle CellDataSet
monocle scran scater umi written 12 weeks ago by supremerulersuraj0 • updated 12 weeks ago by Aaron Lun20k
1
vote
2
answers
147
views
2
answers
4
votes
3
answers
233
views
3
answers
Warning: negative size factors
scran scater singlecellexperiment size factor negative written 4 months ago by Marina V.V.0 • updated 4 months ago by Aaron Lun20k
5
votes
1
answer
337
views
1
answer
Downstream analysis after using mnnCorrect()
scran mnncorrect written 5 months ago by Dave Tang210 • updated 5 months ago by Aaron Lun20k
1
vote
1
answer
231
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 6 months ago by nk0 • updated 6 months ago by Aaron Lun20k
2
votes
1
answer
169
views
1
answer
scran: trendVar() / lm.fit() fails in single-cell RNAseq experiment
scran written 6 months ago by roman.hillje0 • updated 6 months ago by Aaron Lun20k
0
votes
2
answers
264
views
2
answers
scran::trendVar throwing error
scran written 7 months ago by zhalehsafikhani0
3
votes
1
answer
353
views
1
answer
is SCEset fully abandoned in scran?
normalization scran scater splatter written 8 months ago by wt2150 • updated 8 months ago by davis90
1
vote
1
answer
198
views
1
answer
Missing design when using Scran to create a DESeqDataSet
deseq2 scran written 9 months ago by berry140 • updated 9 months ago by Aaron Lun20k
0
votes
1
answer
391
views
1
answer
RNA-Seq Batch correction negative values
sva combat rna-seq scran batch-effect written 9 months ago by rmf0 • updated 9 months ago by Aaron Lun20k
2
votes
1
answer
387
views
1
answer
Scran functions not found
scran single-cell written 10 months ago by alva.james0 • updated 10 months ago by Aaron Lun20k
3
votes
1
answer
550
views
1
answer
0
votes
1
answer
862
views
1
answer
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