3
votes
0
answers
1.5k
views
0
answers
1
vote
2
answers
1.1k
views
2
answers
0
votes
1
answer
861
views
1
answer
3
votes
1
answer
807
views
1
answer
3
votes
1
answer
627
views
1
answer
Using Scran normalization with in edgeR
edger sizefactors estimatedisp scran written 24 months ago by mnaymik10 • updated 24 months ago by Aaron Lun20k
0
votes
3
answers
568
views
3
answers
3
votes
1
answer
549
views
1
answer
3
votes
1
answer
541
views
1
answer
Scran normalization error with computeSumFactors
scran scater written 17 months ago by hrishi27n0 • updated 17 months ago by Aaron Lun20k
1
vote
2
answers
451
views
2
answers
0
votes
1
answer
389
views
1
answer
RNA-Seq Batch correction negative values
sva combat rna-seq scran batch-effect written 9 months ago by rmf0 • updated 9 months ago by Aaron Lun20k
2
votes
1
answer
386
views
1
answer
Scran functions not found
scran single-cell written 10 months ago by alva.james0 • updated 10 months ago by Aaron Lun20k
0
votes
1
answer
375
views
1
answer
3
votes
1
answer
351
views
1
answer
is SCEset fully abandoned in scran?
normalization scran scater splatter written 8 months ago by wt2150 • updated 8 months ago by davis90
5
votes
1
answer
335
views
1
answer
Downstream analysis after using mnnCorrect()
scran mnncorrect written 5 months ago by Dave Tang210 • updated 5 months ago by Aaron Lun20k
0
votes
2
answers
264
views
2
answers
scran::trendVar throwing error
scran written 7 months ago by zhalehsafikhani0
4
votes
3
answers
232
views
3
answers
Warning: negative size factors
scran scater singlecellexperiment size factor negative written 4 months ago by Marina V.V.0 • updated 4 months ago by Aaron Lun20k
1
vote
1
answer
231
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 6 months ago by nk0 • updated 5 months ago by Aaron Lun20k
3
votes
1
answer
211
views
1
answer
Normalizing vs RNA content in scRNAseq data
monocle scran written 12 months ago by ankur.chakravarthy.1010 • updated 12 months ago by Aaron Lun20k
1
vote
1
answer
196
views
1
answer
Missing design when using Scran to create a DESeqDataSet
deseq2 scran written 9 months ago by berry140 • updated 9 months ago by Aaron Lun20k
2
votes
1
answer
166
views
1
answer
scran: trendVar() / lm.fit() fails in single-cell RNAseq experiment
scran written 6 months ago by roman.hillje0 • updated 6 months ago by Aaron Lun20k
3
votes
1
answer
150
views
1
answer
rowSums() rowMeans() don't work on sparse matrix "dgCMatrix"
scran single-cell scater written 10 weeks ago by MengChun Tseng10 • updated 17 days ago by Martin Morgan ♦♦ 22k
1
vote
2
answers
147
views
2
answers
6
votes
1
answer
116
views
1
answer
0
votes
1
answer
74
views
1
answer
Converting scater-normalized UMI data to Monocle CellDataSet
monocle scran scater umi written 11 weeks ago by supremerulersuraj0 • updated 11 weeks ago by Aaron Lun20k
1
vote
1
answer
43
views
1
answer
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