3
votes
0
answers
1.3k
views
0
answers
1
vote
2
answers
859
views
2
answers
0
votes
1
answer
641
views
1
answer
3
votes
1
answer
482
views
1
answer
Using Scran normalization with in edgeR
edger sizefactors estimatedisp scran written 18 months ago by mnaymik10 • updated 18 months ago by Aaron Lun18k
3
votes
1
answer
458
views
1
answer
0
votes
3
answers
447
views
3
answers
3
votes
1
answer
440
views
1
answer
3
votes
1
answer
415
views
1
answer
Scran normalization error with computeSumFactors
scran scater written 11 months ago by hrishi27n0 • updated 11 months ago by Aaron Lun18k
1
vote
2
answers
337
views
2
answers
2
votes
1
answer
330
views
1
answer
Scran functions not found
scran single-cell written 4 months ago by alva.james0 • updated 4 months ago by Aaron Lun18k
0
votes
1
answer
308
views
1
answer
0
votes
1
answer
192
views
1
answer
RNA-Seq Batch correction negative values
sva combat rna-seq scran batch-effect written 3 months ago by rmf0 • updated 3 months ago by Aaron Lun18k
3
votes
1
answer
157
views
1
answer
is SCEset fully abandoned in scran?
normalization scran scater splatter written 12 weeks ago by wt2150 • updated 12 weeks ago by davis90
3
votes
1
answer
144
views
1
answer
Normalizing vs RNA content in scRNAseq data
monocle scran written 6 months ago by ankur.chakravarthy.1010 • updated 6 months ago by Aaron Lun18k
1
vote
1
answer
124
views
1
answer
Missing design when using Scran to create a DESeqDataSet
deseq2 scran written 3 months ago by berry140 • updated 3 months ago by Aaron Lun18k
0
votes
2
answers
123
views
2
answers
1
vote
1
answer
75
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 3 days ago by nk0 • updated 3 days ago by Aaron Lun18k
2
votes
1
answer
63
views
1
answer
scran: trendVar() / lm.fit() fails in single-cell RNAseq experiment
scran written 12 days ago by roman.hillje0 • updated 12 days ago by Aaron Lun18k
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