3
votes
0
answers
1.6k
views
0
answers
3
votes
1
answer
687
views
1
answer
Using Scran normalization with in edgeR
edger sizefactors estimatedisp scran written 2.3 years ago by mnaymik10 • updated 2.3 years ago by Aaron Lun21k
3
votes
1
answer
982
views
1
answer
3
votes
1
answer
630
views
1
answer
3
votes
1
answer
355
views
1
answer
rowSums() rowMeans() don't work on sparse matrix "dgCMatrix"
scran single-cell scater written 5 months ago by MengChun Tseng10 • updated 3 months ago by Martin Morgan ♦♦ 22k
1
vote
2
answers
1.3k
views
2
answers
0
votes
3
answers
650
views
3
answers
0
votes
1
answer
412
views
1
answer
1
vote
2
answers
499
views
2
answers
3
votes
1
answer
600
views
1
answer
Scran normalization error with computeSumFactors
scran scater written 20 months ago by hrishi27n0 • updated 20 months ago by Aaron Lun21k
3
votes
1
answer
259
views
1
answer
Normalizing vs RNA content in scRNAseq data
monocle scran written 15 months ago by ankur.chakravarthy.1020 • updated 15 months ago by Aaron Lun21k
0
votes
1
answer
1.0k
views
1
answer
2
votes
1
answer
431
views
1
answer
Scran functions not found
scran single-cell written 13 months ago by alva.james0 • updated 13 months ago by Aaron Lun21k
0
votes
1
answer
613
views
1
answer
RNA-Seq Batch correction negative values
sva combat rna-seq scran batch-effect written 12 months ago by rmf0 • updated 12 months ago by Aaron Lun21k
1
vote
1
answer
249
views
1
answer
Missing design when using Scran to create a DESeqDataSet
deseq2 scran written 12 months ago by berry140 • updated 12 months ago by Aaron Lun21k
3
votes
1
answer
508
views
1
answer
is SCEset fully abandoned in scran?
normalization scran scater splatter written 12 months ago by wt2150 • updated 12 months ago by davis90
0
votes
2
answers
353
views
2
answers
scran::trendVar throwing error
scran written 10 months ago by zhalehsafikhani0
2
votes
1
answer
231
views
1
answer
scran: trendVar() / lm.fit() fails in single-cell RNAseq experiment
scran written 9 months ago by roman.hillje0 • updated 9 months ago by Aaron Lun21k
1
vote
1
answer
301
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 9 months ago by nk0 • updated 9 months ago by Aaron Lun21k
6
votes
1
answer
605
views
1
answer
Downstream analysis after using mnnCorrect()
scran mnncorrect written 8 months ago by Dave Tang210 • updated 8 months ago by Aaron Lun21k
4
votes
3
answers
437
views
3
answers
Warning: negative size factors
scran scater singlecellexperiment size factor negative written 7 months ago by Marina V.V.0 • updated 7 months ago by Aaron Lun21k
1
vote
2
answers
181
views
2
answers
0
votes
1
answer
116
views
1
answer
Converting scater-normalized UMI data to Monocle CellDataSet
monocle scran scater umi written 5 months ago by supremerulersuraj0 • updated 5 months ago by Aaron Lun21k
6
votes
1
answer
258
views
1
answer
1
vote
1
answer
134
views
1
answer
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