3
votes
0
answers
1.4k
views
0
answers
3
votes
1
answer
553
views
1
answer
Using Scran normalization with in edgeR
edger sizefactors estimatedisp scran written 21 months ago by mnaymik10 • updated 21 months ago by Aaron Lun19k
3
votes
1
answer
641
views
1
answer
3
votes
1
answer
501
views
1
answer
1
vote
2
answers
1.0k
views
2
answers
0
votes
3
answers
513
views
3
answers
0
votes
1
answer
336
views
1
answer
1
vote
2
answers
397
views
2
answers
3
votes
1
answer
493
views
1
answer
Scran normalization error with computeSumFactors
scran scater written 14 months ago by hrishi27n0 • updated 14 months ago by Aaron Lun19k
3
votes
1
answer
178
views
1
answer
Normalizing vs RNA content in scRNAseq data
monocle scran written 9 months ago by ankur.chakravarthy.1010 • updated 9 months ago by Aaron Lun19k
0
votes
1
answer
727
views
1
answer
2
votes
1
answer
357
views
1
answer
Scran functions not found
scran single-cell written 7 months ago by alva.james0 • updated 7 months ago by Aaron Lun19k
0
votes
1
answer
276
views
1
answer
RNA-Seq Batch correction negative values
sva combat rna-seq scran batch-effect written 6 months ago by rmf0 • updated 6 months ago by Aaron Lun19k
1
vote
1
answer
161
views
1
answer
Missing design when using Scran to create a DESeqDataSet
deseq2 scran written 6 months ago by berry140 • updated 6 months ago by Aaron Lun19k
3
votes
1
answer
213
views
1
answer
is SCEset fully abandoned in scran?
normalization scran scater splatter written 5 months ago by wt2150 • updated 5 months ago by davis90
0
votes
2
answers
191
views
2
answers
scran::trendVar throwing error
scran written 4 months ago by zhalehsafikhani0
2
votes
1
answer
108
views
1
answer
scran: trendVar() / lm.fit() fails in single-cell RNAseq experiment
scran written 3 months ago by roman.hillje0 • updated 3 months ago by Aaron Lun19k
1
vote
1
answer
162
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 3 months ago by nk0 • updated 3 months ago by Aaron Lun19k
5
votes
1
answer
182
views
1
answer
Downstream analysis after using mnnCorrect()
scran mnncorrect written 9 weeks ago by Dave Tang210 • updated 9 weeks ago by Aaron Lun19k
4
votes
3
answers
124
views
3
answers
Warning: negative size factors
scran scater singlecellexperiment size factor negative written 7 weeks ago by Marina V.V.0 • updated 7 weeks ago by Aaron Lun19k
0
votes
1
answer
62
views
1
answer
Normalizing to multiple spike-in concentrations with scran
scran spike-in written 29 days ago by supremerulersuraj0 • updated 29 days ago by Aaron Lun19k
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