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error in (function (classes, fdef, mtable) unable to find an inherited method for function logNormCounts for signature Seurat
seurat singler written 12 days ago by mathai.c • 0 • updated 8 days ago by Gordon Smyth ♦ 39k
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123
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PCA outliers cleaning
pipeline scrnaseq seurat singlecellexperiment written 4 weeks ago by albadrs.93 • 10
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Error: no applicable method for `RunTSNE` applied to an object of class "try-error"
scrna seurat debugging exceptions unit-test written 4 weeks ago by moldach • 20 • updated 4 weeks ago by Martin Morgan ♦♦ 24k
2
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211
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DE analysis for 10X scRNA-seq data with multiple conditions and multiple replicates
de seurat scrna-seq written 3 months ago by ilee8 • 0 • updated 3 months ago by Aaron Lun • 25k
2
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409
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1
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How to convert large gene counts data into matrix?
R bioinformatics seurat singlecell written 4 months ago by sambunga094 • 0 • updated 4 months ago by Aaron Lun • 25k
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Seurat 2.3.4 installation
seurat written 6 months ago by Mike • 10 • updated 6 months ago by Gordon Smyth ♦ 39k
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210
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gene counts in Seurat after RunCCA() and AlignSubspace()
seurat scrna-seq cca written 11 months ago by Bogdan • 580 • updated 11 months ago by Aaron Lun • 25k
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Deconvolution Method in Seurat and convert from SingleCellExperiment
rnaseq scater seurat singlecellexperiment written 12 months ago by hamza_karakurt • 30 • updated 11 months ago by Gordon Smyth ♦ 39k
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scRNA-seq: a question about the names of the columns in a Seurat object
seurat scrna-seq written 12 months ago by Bogdan • 580 • updated 12 months ago by Steve Lianoglou ♦ 12k
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694
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newSCESet and SingleCellExperiment basic differences and TMM Normalization
rnaseq single-cell scater seurat singlecellexperiment written 14 months ago by hamza_karakurt • 30
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Seurat/DESeq2 - single cell RNA-seq differential expression
deseq2 seurat written 16 months ago by deut2016 • 0 • updated 16 months ago by Michael Love ♦ 26k
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Conversion to SingleCellExperiment from Seurat objects
seurat singlecellexperiment written 18 months ago by Wolfgang Huber ♦ 13k
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Cell type specific cell markers for Seurat based analysis.
clustering single cell seurat written 2.4 years ago by hrishi27n • 20 • updated 2.4 years ago by ankur.chakravarthy.10 • 40
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