1
vote
6
answers
794
views
6
answers
ShortRead with large fastq files
shortread written 2.5 years ago by danova_fr20
0
votes
4
answers
504
views
4
answers
read coverage per transcript for RNASeq
rnaseq coverage process shortread written 8.2 years ago by Jessica Hunter40 • updated 8.2 years ago by Martin Morgan ♦♦ 20k
3
votes
4
answers
691
views
4
answers
0
votes
4
answers
1.8k
views
4
answers
convert fastq file to fasta using shortread package
shortread illumina written 2.7 years ago by kelvinfrog750 • updated 2.7 years ago by Martin Morgan ♦♦ 20k
0
votes
3
answers
470
views
3
answers
2
votes
3
answers
483
views
3
answers
0
votes
2
answers
337
views
2
answers
Solexa fastq files and BLAT
cancer biostrings shortread written 8.9 years ago by Daniel Brewer1.8k • updated 8.9 years ago by Martin Morgan ♦♦ 20k
0
votes
2
answers
381
views
2
answers
pileup function in ShortRead package
alignment shortread written 8.1 years ago by Nora Rieber40 • updated 8.1 years ago by Martin Morgan ♦♦ 20k
0
votes
2
answers
409
views
2
answers
ShortRead QA
sequencing shortread written 7.3 years ago by Alex Gutteridge650 • updated 7.3 years ago by Martin Morgan ♦♦ 20k
0
votes
2
answers
391
views
2
answers
0
votes
2
answers
332
views
2
answers
mismatch & replacement
shortread written 7.0 years ago by Daniel.Berner@unibas.ch90 • updated 7.0 years ago by Harris A. Jaffee590
0
votes
2
answers
827
views
2
answers
readFastq, writeFastq, compressed files and unix pipes.
shortread written 4.9 years ago by Ivan Gregoretti310 • updated 4.9 years ago by Martin Morgan ♦♦ 20k
0
votes
2
answers
581
views
2
answers
0
votes
2
answers
401
views
2
answers
ShortRead summary stats
shortread illumina written 2.7 years ago by danova_fr20
0
votes
2
answers
413
views
2
answers
gcContent error with shortread
shortread written 2.5 years ago by danova_fr20
1
vote
2
answers
263
views
2
answers
FastqStreamer and qualitytype
shortread written 14 months ago by David860
0
votes
2
answers
301
views
2
answers
0
votes
1
answer
255
views
1
answer
Vignette for ShortRead
shortread written 9.3 years ago by joseph330 • updated 9.3 years ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
277
views
1
answer
0
votes
1
answer
314
views
1
answer
possible bug in extendReads() in package chipseq
alignment shortread written 8.0 years ago by Nora Rieber40 • updated 8.0 years ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
307
views
1
answer
ShortRead internal: too many 'snap' entries
shortread written 7.9 years ago by Ramzi TEMANNI150 • updated 7.9 years ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
306
views
1
answer
Shortread and filtering of duplicate reads
shortread written 7.8 years ago by Johannes Waage50 • updated 7.8 years ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
308
views
1
answer
ShortRead with BAM
shortread written 7.6 years ago by Duke210 • updated 7.6 years ago by James W. MacDonald45k
0
votes
1
answer
256
views
1
answer
Typo in ?FastqQuality help page?
shortread written 7.5 years ago by Peng Yu940 • updated 7.5 years ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
326
views
1
answer
ShortRead information
shortread written 7.5 years ago by Jennifer Dupiot10 • updated 7.5 years ago by Martin Morgan ♦♦ 20k
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