1
vote
6
answers
974
views
6
answers
ShortRead with large fastq files
shortread written 3.0 years ago by danova_fr20
0
votes
4
answers
664
views
4
answers
read coverage per transcript for RNASeq
rnaseq coverage process shortread written 8.8 years ago by Jessica Hunter40 • updated 8.8 years ago by Martin Morgan ♦♦ 21k
3
votes
4
answers
811
views
4
answers
0
votes
4
answers
2.2k
views
4
answers
convert fastq file to fasta using shortread package
shortread illumina written 3.3 years ago by kelvinfrog750 • updated 3.3 years ago by Martin Morgan ♦♦ 21k
0
votes
3
answers
572
views
3
answers
2
votes
3
answers
623
views
3
answers
0
votes
2
answers
448
views
2
answers
Solexa fastq files and BLAT
cancer biostrings shortread written 9.4 years ago by Daniel Brewer1.8k • updated 9.4 years ago by Martin Morgan ♦♦ 21k
0
votes
2
answers
455
views
2
answers
pileup function in ShortRead package
alignment shortread written 8.7 years ago by Nora Rieber40 • updated 8.7 years ago by Martin Morgan ♦♦ 21k
0
votes
2
answers
536
views
2
answers
ShortRead QA
sequencing shortread written 7.9 years ago by Alex Gutteridge650 • updated 7.9 years ago by Martin Morgan ♦♦ 21k
0
votes
2
answers
503
views
2
answers
0
votes
2
answers
473
views
2
answers
mismatch & replacement
shortread written 7.6 years ago by Daniel.Berner@unibas.ch90 • updated 7.6 years ago by Harris A. Jaffee590
0
votes
2
answers
961
views
2
answers
readFastq, writeFastq, compressed files and unix pipes.
shortread written 5.5 years ago by Ivan Gregoretti310 • updated 5.5 years ago by Martin Morgan ♦♦ 21k
0
votes
2
answers
675
views
2
answers
0
votes
2
answers
468
views
2
answers
ShortRead summary stats
shortread illumina written 3.2 years ago by danova_fr20
0
votes
2
answers
489
views
2
answers
gcContent error with shortread
shortread written 3.1 years ago by danova_fr20
1
vote
2
answers
371
views
2
answers
FastqStreamer and qualitytype
shortread written 21 months ago by David860
0
votes
2
answers
400
views
2
answers
4
votes
2
answers
196
views
2
answers
No BAM option in readAligned from the ShortRead package
shortread nucler bioconductor bam file written 4 months ago by jfgout10 • updated 4 months ago by Dario Strbenac1.4k
0
votes
1
answer
299
views
1
answer
Vignette for ShortRead
shortread written 9.9 years ago by joseph330 • updated 9.9 years ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
387
views
1
answer
0
votes
1
answer
370
views
1
answer
possible bug in extendReads() in package chipseq
alignment shortread written 8.6 years ago by Nora Rieber40 • updated 8.6 years ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
391
views
1
answer
ShortRead internal: too many 'snap' entries
shortread written 8.5 years ago by Ramzi TEMANNI160 • updated 8.5 years ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
361
views
1
answer
Shortread and filtering of duplicate reads
shortread written 8.4 years ago by Johannes Waage50 • updated 8.4 years ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
381
views
1
answer
ShortRead with BAM
shortread written 8.1 years ago by Duke210 • updated 8.1 years ago by James W. MacDonald46k
0
votes
1
answer
297
views
1
answer
Typo in ?FastqQuality help page?
shortread written 8.1 years ago by Peng Yu940 • updated 8.1 years ago by Martin Morgan ♦♦ 21k
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