3
votes
4
answers
774
views
4
answers
5
votes
1
answer
823
views
1
answer
Trimming with ShortRead
shortread written 3.1 years ago by cookie20 • updated 3.1 years ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
279
views
1
answer
Vignette for ShortRead
shortread written 9.8 years ago by joseph330 • updated 9.8 years ago by Martin Morgan ♦♦ 21k
0
votes
2
answers
407
views
2
answers
Solexa fastq files and BLAT
cancer biostrings shortread written 9.3 years ago by Daniel Brewer1.8k • updated 9.3 years ago by Martin Morgan ♦♦ 21k
0
votes
0
answers
391
views
0
answers
0
votes
1
answer
355
views
1
answer
0
votes
4
answers
620
views
4
answers
read coverage per transcript for RNASeq
rnaseq coverage process shortread written 8.6 years ago by Jessica Hunter40 • updated 8.6 years ago by Martin Morgan ♦♦ 21k
0
votes
2
answers
435
views
2
answers
pileup function in ShortRead package
alignment shortread written 8.5 years ago by Nora Rieber40 • updated 8.5 years ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
353
views
1
answer
possible bug in extendReads() in package chipseq
alignment shortread written 8.4 years ago by Nora Rieber40 • updated 8.4 years ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
359
views
1
answer
ShortRead internal: too many 'snap' entries
shortread written 8.3 years ago by Ramzi TEMANNI160 • updated 8.3 years ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
341
views
1
answer
Shortread and filtering of duplicate reads
shortread written 8.3 years ago by Johannes Waage50 • updated 8.3 years ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
354
views
1
answer
ShortRead with BAM
shortread written 8.0 years ago by Duke210 • updated 8.0 years ago by James W. MacDonald46k
0
votes
1
answer
279
views
1
answer
Typo in ?FastqQuality help page?
shortread written 7.9 years ago by Peng Yu940 • updated 7.9 years ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
425
views
1
answer
ShortRead information
shortread written 7.9 years ago by Jennifer Dupiot10 • updated 7.9 years ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
693
views
1
answer
Error installing Rsamtools
shortread rsamtools written 7.9 years ago by Paul Geeleher1.3k • updated 7.9 years ago by Martin Morgan ♦♦ 21k
0
votes
2
answers
493
views
2
answers
ShortRead QA
sequencing shortread written 7.8 years ago by Alex Gutteridge650 • updated 7.8 years ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
361
views
1
answer
fastq upload time
shortread written 7.6 years ago by Daniel.Berner@unibas.ch90 • updated 7.6 years ago by Sean Davis21k
0
votes
2
answers
476
views
2
answers
0
votes
1
answer
420
views
1
answer
ShortRead qa() for BAM files?
coverage alignment shortread written 7.5 years ago by wrighth260 • updated 7.5 years ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
444
views
1
answer
ShortRead for sequencing data quality assessment
sequencing shortread written 7.5 years ago by heyi xiao360 • updated 7.5 years ago by Valerie Obenchain ♦♦ 6.4k
0
votes
1
answer
564
views
1
answer
0
votes
2
answers
424
views
2
answers
mismatch & replacement
shortread written 7.5 years ago by Daniel.Berner@unibas.ch90 • updated 7.5 years ago by Harris A. Jaffee590
0
votes
1
answer
476
views
1
answer
A question about ShortRead_1.8.2.tar.gz.
shortread written 7.3 years ago by xujiabao10 • updated 7.3 years ago by Dan Tenenbaum ♦♦ 8.2k
0
votes
1
answer
497
views
1
answer
A question about ShortRead_1.8.2.tar.gz.
shortread written 7.3 years ago by Dan Tenenbaum ♦♦ 8.2k • updated 7.3 years ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
419
views
1
answer
Error loading ShortRead
shortread written 6.9 years ago by raffaele calogero500 • updated 6.9 years ago by Martin Morgan ♦♦ 21k
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