3
votes
4
answers
824
views
4
answers
5
votes
1
answer
985
views
1
answer
Trimming with ShortRead
shortread written 3.3 years ago by cookie20 • updated 3.3 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
306
views
1
answer
Vignette for ShortRead
shortread written 10.0 years ago by joseph330 • updated 10.0 years ago by Martin Morgan ♦♦ 22k
0
votes
2
answers
459
views
2
answers
Solexa fastq files and BLAT
cancer biostrings shortread written 9.5 years ago by Daniel Brewer1.8k • updated 9.5 years ago by Martin Morgan ♦♦ 22k
0
votes
0
answers
431
views
0
answers
0
votes
1
answer
396
views
1
answer
0
votes
4
answers
681
views
4
answers
read coverage per transcript for RNASeq
rnaseq coverage process shortread written 8.9 years ago by Jessica Hunter40 • updated 8.9 years ago by Martin Morgan ♦♦ 22k
0
votes
2
answers
461
views
2
answers
pileup function in ShortRead package
alignment shortread written 8.8 years ago by Nora Rieber40 • updated 8.8 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
375
views
1
answer
possible bug in extendReads() in package chipseq
alignment shortread written 8.7 years ago by Nora Rieber40 • updated 8.7 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
397
views
1
answer
ShortRead internal: too many 'snap' entries
shortread written 8.5 years ago by Ramzi TEMANNI160 • updated 8.5 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
377
views
1
answer
Shortread and filtering of duplicate reads
shortread written 8.5 years ago by Johannes Waage50 • updated 8.5 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
386
views
1
answer
ShortRead with BAM
shortread written 8.2 years ago by Duke210 • updated 8.2 years ago by James W. MacDonald46k
0
votes
1
answer
303
views
1
answer
Typo in ?FastqQuality help page?
shortread written 8.2 years ago by Peng Yu940 • updated 8.2 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
491
views
1
answer
ShortRead information
shortread written 8.2 years ago by Jennifer Dupiot10 • updated 8.2 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
770
views
1
answer
Error installing Rsamtools
shortread rsamtools written 8.1 years ago by Paul Geeleher1.3k • updated 8.1 years ago by Martin Morgan ♦♦ 22k
0
votes
2
answers
554
views
2
answers
ShortRead QA
sequencing shortread written 8.0 years ago by Alex Gutteridge650 • updated 8.0 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
418
views
1
answer
fastq upload time
shortread written 7.8 years ago by Daniel.Berner@unibas.ch90 • updated 7.8 years ago by Sean Davis21k
0
votes
2
answers
512
views
2
answers
0
votes
1
answer
468
views
1
answer
ShortRead qa() for BAM files?
coverage alignment shortread written 7.8 years ago by wrighth260 • updated 7.8 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
481
views
1
answer
ShortRead for sequencing data quality assessment
sequencing shortread written 7.8 years ago by heyi xiao360 • updated 7.8 years ago by Valerie Obenchain ♦♦ 6.5k
0
votes
1
answer
599
views
1
answer
0
votes
2
answers
485
views
2
answers
mismatch & replacement
shortread written 7.7 years ago by Daniel.Berner@unibas.ch90 • updated 7.7 years ago by Harris A. Jaffee590
0
votes
1
answer
497
views
1
answer
A question about ShortRead_1.8.2.tar.gz.
shortread written 7.5 years ago by xujiabao10 • updated 7.5 years ago by Dan Tenenbaum ♦♦ 8.2k
0
votes
1
answer
542
views
1
answer
A question about ShortRead_1.8.2.tar.gz.
shortread written 7.5 years ago by Dan Tenenbaum ♦♦ 8.2k • updated 7.5 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
460
views
1
answer
Error loading ShortRead
shortread written 7.2 years ago by raffaele calogero500 • updated 7.2 years ago by Martin Morgan ♦♦ 22k
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