8
votes
3
answers
1.4k
views
7 follow
3
answers
5
votes
1
answer
1.2k
views
1
answer
Trimming with ShortRead
shortread written 3.7 years ago by cookie20 • updated 3.7 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
498
views
1
answer
fastq upload time
shortread written 8.2 years ago by Daniel.Berner@unibas.ch90 • updated 8.2 years ago by Sean Davis21k
3
votes
4
answers
900
views
4
answers
1
vote
6
answers
1.1k
views
6
answers
ShortRead with large fastq files
shortread written 3.5 years ago by danova_fr20
4
votes
2
answers
314
views
2
answers
No BAM option in readAligned from the ShortRead package
shortread nucler bioconductor bam file written 9 months ago by jfgout10 • updated 9 months ago by Dario Strbenac1.4k
0
votes
1
answer
656
views
1
answer
0
votes
1
answer
737
views
1
answer
Finding my un-counted reads
sequencing rtracklayer shortread genomicranges written 5.3 years ago by Sam McInturf300 • updated 5.3 years ago by Valerie Obenchain ♦♦ 6.7k
3
votes
1
answer
1.4k
views
1
answer
fastqSampler and writeFastq in shortread package
shortread fastq write written 3.8 years ago by francesca.defilippis60 • updated 3.8 years ago by Martin Morgan ♦♦ 22k
2
votes
3
answers
750
views
3
answers
4
votes
1
answer
921
views
1
answer
IRanges/ShortRead causing crash?
biostrings iranges shortread written 3.1 years ago by pavitrarc20 • updated 3.1 years ago by Martin Morgan ♦♦ 22k
5
votes
1
answer
657
views
1
answer
Using ShortRead (or other) to trim from pattern match onwards
shortread written 2.7 years ago by chapmandu220 • updated 2.7 years ago by Martin Morgan ♦♦ 22k
5
votes
0
answers
1.5k
views
0
answers
5
votes
1
answer
442
views
1
answer
strsplit method for DNAStringSet objects
biostrings shortread written 20 months ago by jma199130 • updated 20 months ago by Hervé Pagès ♦♦ 13k
1
vote
1
answer
93
views
1
answer
Remove reads from raw fastq
biostrings shortread written 5 weeks ago by ferbecneu0 • updated 5 weeks ago by Gordon Smyth35k
0
votes
1
answer
346
views
1
answer
Vignette for ShortRead
shortread written 10.4 years ago by joseph330 • updated 10.4 years ago by Martin Morgan ♦♦ 22k
0
votes
2
answers
514
views
2
answers
Solexa fastq files and BLAT
cancer biostrings shortread written 9.9 years ago by Daniel Brewer1.9k • updated 9.9 years ago by Martin Morgan ♦♦ 22k
0
votes
0
answers
479
views
0
answers
0
votes
2
answers
498
views
2
answers
pileup function in ShortRead package
alignment shortread written 9.2 years ago by Nora Rieber40 • updated 9.2 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
427
views
1
answer
possible bug in extendReads() in package chipseq
alignment shortread written 9.1 years ago by Nora Rieber40 • updated 9.1 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
429
views
1
answer
ShortRead internal: too many 'snap' entries
shortread written 8.9 years ago by Ramzi TEMANNI160 • updated 8.9 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
445
views
1
answer
Shortread and filtering of duplicate reads
shortread written 8.9 years ago by Johannes Waage50 • updated 8.9 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
423
views
1
answer
ShortRead with BAM
shortread written 8.6 years ago by Duke210 • updated 8.6 years ago by James W. MacDonald48k
0
votes
1
answer
337
views
1
answer
Typo in ?FastqQuality help page?
shortread written 8.6 years ago by Peng Yu940 • updated 8.6 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
547
views
1
answer
ShortRead information
shortread written 8.5 years ago by Jennifer Dupiot10 • updated 8.5 years ago by Martin Morgan ♦♦ 22k
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