0
votes
1
answer
299
views
1
answer
fastq upload time
shortread written 7.2 years ago by Daniel.Berner@unibas.ch90 • updated 7.2 years ago by Sean Davis21k
3
votes
4
answers
691
views
4
answers
5
votes
1
answer
683
views
1
answer
Trimming with ShortRead
shortread written 2.6 years ago by cookie20 • updated 2.6 years ago by Martin Morgan ♦♦ 20k
1
vote
6
answers
795
views
6
answers
ShortRead with large fastq files
shortread written 2.5 years ago by danova_fr20
0
votes
1
answer
485
views
1
answer
0
votes
1
answer
526
views
1
answer
Finding my un-counted reads
sequencing rtracklayer shortread genomicranges written 4.2 years ago by Sam McInturf300 • updated 4.2 years ago by Valerie Obenchain ♦♦ 6.4k
3
votes
1
answer
912
views
1
answer
fastqSampler and writeFastq in shortread package
shortread fastq write written 2.8 years ago by francesca.defilippis40 • updated 2.8 years ago by Martin Morgan ♦♦ 20k
2
votes
3
answers
484
views
3
answers
4
votes
1
answer
689
views
1
answer
IRanges/ShortRead causing crash?
biostrings iranges shortread written 2.0 years ago by pavitrarc20 • updated 2.0 years ago by Martin Morgan ♦♦ 20k
5
votes
1
answer
388
views
1
answer
Using ShortRead (or other) to trim from pattern match onwards
shortread written 19 months ago by chapmandu220 • updated 19 months ago by Martin Morgan ♦♦ 20k
4
votes
0
answers
1.0k
views
0
answers
5
votes
1
answer
221
views
1
answer
strsplit method for DNAStringSet objects
biostrings shortread written 7 months ago by jma199130 • updated 7 months ago by Hervé Pagès ♦♦ 13k
0
votes
1
answer
255
views
1
answer
Vignette for ShortRead
shortread written 9.4 years ago by joseph330 • updated 9.4 years ago by Martin Morgan ♦♦ 20k
0
votes
2
answers
338
views
2
answers
Solexa fastq files and BLAT
cancer biostrings shortread written 8.9 years ago by Daniel Brewer1.8k • updated 8.9 years ago by Martin Morgan ♦♦ 20k
0
votes
0
answers
332
views
0
answers
0
votes
2
answers
381
views
2
answers
pileup function in ShortRead package
alignment shortread written 8.1 years ago by Nora Rieber40 • updated 8.1 years ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
314
views
1
answer
possible bug in extendReads() in package chipseq
alignment shortread written 8.0 years ago by Nora Rieber40 • updated 8.0 years ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
307
views
1
answer
ShortRead internal: too many 'snap' entries
shortread written 7.9 years ago by Ramzi TEMANNI150 • updated 7.9 years ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
306
views
1
answer
Shortread and filtering of duplicate reads
shortread written 7.9 years ago by Johannes Waage50 • updated 7.9 years ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
309
views
1
answer
ShortRead with BAM
shortread written 7.6 years ago by Duke210 • updated 7.6 years ago by James W. MacDonald45k
0
votes
1
answer
256
views
1
answer
Typo in ?FastqQuality help page?
shortread written 7.5 years ago by Peng Yu940 • updated 7.5 years ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
326
views
1
answer
ShortRead information
shortread written 7.5 years ago by Jennifer Dupiot10 • updated 7.5 years ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
590
views
1
answer
Error installing Rsamtools
shortread rsamtools written 7.5 years ago by Paul Geeleher1.3k • updated 7.5 years ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
354
views
1
answer
ShortRead qa() for BAM files?
coverage alignment shortread written 7.1 years ago by wrighth260 • updated 7.1 years ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
357
views
1
answer
ShortRead for sequencing data quality assessment
sequencing shortread written 7.1 years ago by heyi xiao360 • updated 7.1 years ago by Valerie Obenchain ♦♦ 6.4k
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