5
votes
2
answers
240
views
2
answers
0
votes
1
answer
84
views
1
answer
Should I use legacy functions in ShortRead package?
shortread written 4 months ago by Frocha10 • updated 4 months ago by Martin Morgan ♦♦ 22k
4
votes
1
answer
152
views
1
answer
4
votes
2
answers
211
views
2
answers
No BAM option in readAligned from the ShortRead package
shortread nucler bioconductor bam file written 5 months ago by jfgout10 • updated 5 months ago by Dario Strbenac1.4k
1
vote
1
answer
154
views
1
answer
bplapply with ShortRead functions
shortread biocparallel written 5 months ago by Vivek.b40 • updated 5 months ago by Martin Morgan ♦♦ 22k
1
vote
1
answer
197
views
1
answer
0
votes
2
answers
411
views
2
answers
5
votes
1
answer
346
views
1
answer
strsplit method for DNAStringSet objects
biostrings shortread written 15 months ago by jma199130 • updated 15 months ago by Hervé Pagès ♦♦ 13k
0
votes
1
answer
622
views
1
answer
How to check that the reads in two fastq files are in the same order
shortread fastq written 19 months ago by Frocha10 • updated 19 months ago by James W. MacDonald46k
1
vote
2
answers
388
views
2
answers
FastqStreamer and qualitytype
shortread written 22 months ago by David860
1
vote
1
answer
381
views
1
answer
Shortread convert S4 vector qualityScore to vector
shortread written 23 months ago by Radek40 • updated 23 months ago by Martin Morgan ♦♦ 22k
0
votes
0
answers
425
views
0
answers
make: *** [ShortRead.so] Error 1
shortread written 2.1 years ago by mictadlo0 • updated 2.1 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
344
views
1
answer
Error Raised When Trying To Use pileup()
biostrings shortread hilbertvis rsamtools written 2.2 years ago by travis.m.couture0 • updated 2.2 years ago by Martin Morgan ♦♦ 22k
4
votes
0
answers
1.3k
views
0
answers
1
vote
1
answer
583
views
1
answer
ShortRead quality assessment functions (qa and qa2) from ShortReadQ object
shortread written 2.3 years ago by phil.chapman120 • updated 2.3 years ago by Martin Morgan ♦♦ 22k
5
votes
1
answer
539
views
1
answer
Using ShortRead (or other) to trim from pattern match onwards
shortread written 2.3 years ago by chapmandu220 • updated 2.3 years ago by Martin Morgan ♦♦ 22k
0
votes
0
answers
507
views
0
answers
0
votes
0
answers
443
views
0
answers
4
votes
1
answer
836
views
1
answer
IRanges/ShortRead causing crash?
biostrings iranges shortread written 2.7 years ago by pavitrarc20 • updated 2.7 years ago by Martin Morgan ♦♦ 22k
1
vote
1
answer
874
views
1
answer
0
votes
0
answers
535
views
0
answers
ShortRead Error in slot(object, ".srlist")
shortread software error written 2.8 years ago by sbrown360 • updated 2.8 years ago by Martin Morgan ♦♦ 22k
1
vote
1
answer
608
views
1
answer
1
vote
1
answer
973
views
1
answer
FastqSampler with trimmed paired-end reads
shortread written 3.1 years ago by Arne Muller20 • updated 3.1 years ago by Martin Morgan ♦♦ 22k
1
vote
6
answers
1.0k
views
6
answers
ShortRead with large fastq files
shortread written 3.1 years ago by danova_fr20
0
votes
2
answers
501
views
2
answers
gcContent error with shortread
shortread written 3.2 years ago by danova_fr20
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