0
votes
1
answer
58
views
1
answer
Should I use legacy functions in ShortRead package?
shortread written 6 weeks ago by Frocha10 • updated 6 weeks ago by Martin Morgan ♦♦ 21k
4
votes
1
answer
111
views
1
answer
4
votes
2
answers
157
views
2
answers
No BAM option in readAligned from the ShortRead package
shortread nucler bioconductor bam file written 9 weeks ago by jfgout10 • updated 9 weeks ago by Dario Strbenac1.4k
1
vote
1
answer
112
views
1
answer
bplapply with ShortRead functions
shortread biocparallel written 9 weeks ago by Vivek.b40 • updated 9 weeks ago by Martin Morgan ♦♦ 21k
1
vote
1
answer
169
views
1
answer
0
votes
2
answers
368
views
2
answers
5
votes
1
answer
293
views
1
answer
strsplit method for DNAStringSet objects
biostrings shortread written 12 months ago by jma199130 • updated 12 months ago by Hervé Pagès ♦♦ 13k
0
votes
1
answer
505
views
1
answer
How to check that the reads in two fastq files are in the same order
shortread fastq written 16 months ago by Frocha10 • updated 16 months ago by James W. MacDonald46k
1
vote
2
answers
338
views
2
answers
FastqStreamer and qualitytype
shortread written 19 months ago by David860
1
vote
1
answer
339
views
1
answer
Shortread convert S4 vector qualityScore to vector
shortread written 20 months ago by Radek40 • updated 20 months ago by Martin Morgan ♦♦ 21k
0
votes
0
answers
370
views
0
answers
make: *** [ShortRead.so] Error 1
shortread written 22 months ago by mictadlo0 • updated 22 months ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
316
views
1
answer
Error Raised When Trying To Use pileup()
biostrings shortread hilbertvis rsamtools written 23 months ago by travis.m.couture0 • updated 23 months ago by Martin Morgan ♦♦ 21k
4
votes
0
answers
1.2k
views
0
answers
1
vote
1
answer
519
views
1
answer
ShortRead quality assessment functions (qa and qa2) from ShortReadQ object
shortread written 2.0 years ago by phil.chapman120 • updated 2.0 years ago by Martin Morgan ♦♦ 21k
5
votes
1
answer
471
views
1
answer
Using ShortRead (or other) to trim from pattern match onwards
shortread written 2.0 years ago by chapmandu220 • updated 2.0 years ago by Martin Morgan ♦♦ 21k
0
votes
0
answers
459
views
0
answers
0
votes
0
answers
398
views
0
answers
4
votes
1
answer
792
views
1
answer
IRanges/ShortRead causing crash?
biostrings iranges shortread written 2.4 years ago by pavitrarc20 • updated 2.4 years ago by Martin Morgan ♦♦ 21k
1
vote
1
answer
793
views
1
answer
0
votes
0
answers
507
views
0
answers
ShortRead Error in slot(object, ".srlist")
shortread software error written 2.5 years ago by sbrown360 • updated 2.5 years ago by Martin Morgan ♦♦ 21k
1
vote
1
answer
552
views
1
answer
1
vote
1
answer
887
views
1
answer
FastqSampler with trimmed paired-end reads
shortread written 2.8 years ago by Arne Muller20 • updated 2.8 years ago by Martin Morgan ♦♦ 21k
1
vote
6
answers
918
views
6
answers
ShortRead with large fastq files
shortread written 2.9 years ago by danova_fr20
0
votes
2
answers
467
views
2
answers
gcContent error with shortread
shortread written 3.0 years ago by danova_fr20
2
votes
3
answers
572
views
3
answers
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