0
votes
4
answers
2.5k
views
4
answers
convert fastq file to fasta using shortread package
shortread illumina written 3.5 years ago by kelvinfrog750 • updated 3.5 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
1.8k
views
1
answer
0
votes
1
answer
1.5k
views
1
answer
readFasta and gzipped FASTA files
shortread written 5.6 years ago by Ivan Gregoretti310 • updated 5.6 years ago by Martin Morgan ♦♦ 22k
5
votes
0
answers
1.4k
views
0
answers
3
votes
1
answer
1.3k
views
1
answer
fastqSampler and writeFastq in shortread package
shortread fastq write written 3.6 years ago by francesca.defilippis40 • updated 3.6 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
1.1k
views
1
answer
ShortRead- how to edit the id in a fastq
shortread written 3.7 years ago by newmanss0 • updated 3.7 years ago by Valerie Obenchain ♦♦ 6.6k
5
votes
1
answer
1.1k
views
1
answer
Trimming with ShortRead
shortread written 3.5 years ago by cookie20 • updated 3.5 years ago by Martin Morgan ♦♦ 22k
1
vote
6
answers
1.1k
views
6
answers
ShortRead with large fastq files
shortread written 3.3 years ago by danova_fr20
1
vote
1
answer
1.0k
views
1
answer
FastqSampler with trimmed paired-end reads
shortread written 3.2 years ago by Arne Muller20 • updated 3.2 years ago by Martin Morgan ♦♦ 22k
0
votes
2
answers
1.0k
views
2
answers
readFastq, writeFastq, compressed files and unix pipes.
shortread written 5.8 years ago by Ivan Gregoretti310 • updated 5.8 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
955
views
1
answer
Trouble creating a ShortReadQ object and using writeFastq
preprocessing shortread written 5.6 years ago by Noah Dowell410 • updated 5.6 years ago by Martin Morgan ♦♦ 22k
1
vote
1
answer
933
views
1
answer
4
votes
1
answer
875
views
1
answer
IRanges/ShortRead causing crash?
biostrings iranges shortread written 2.8 years ago by pavitrarc20 • updated 2.8 years ago by Martin Morgan ♦♦ 22k
3
votes
4
answers
848
views
4
answers
0
votes
1
answer
846
views
1
answer
bioc package installation problem
shortread biocinstaller written 5.4 years ago by carol white680 • updated 5.4 years ago by Dan Tenenbaum ♦♦ 8.2k
0
votes
1
answer
817
views
1
answer
Error installing Rsamtools
shortread rsamtools written 8.3 years ago by Paul Geeleher1.3k • updated 8.3 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
737
views
1
answer
ShortRead error when reading BAM file
shortread written 7.0 years ago by Alex Gutteridge650 • updated 7.0 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
723
views
1
answer
shortread readAligned with BWA
go shortread written 7.1 years ago by nac280 • updated 7.1 years ago by Martin Morgan ♦♦ 22k
0
votes
4
answers
718
views
4
answers
read coverage per transcript for RNASeq
rnaseq coverage process shortread written 9.1 years ago by Jessica Hunter40 • updated 9.0 years ago by Martin Morgan ♦♦ 22k
6
votes
3
answers
713
views
6 follow
3
answers
0
votes
2
answers
704
views
2
answers
0
votes
1
answer
697
views
1
answer
Finding my un-counted reads
sequencing rtracklayer shortread genomicranges written 5.1 years ago by Sam McInturf300 • updated 5.1 years ago by Valerie Obenchain ♦♦ 6.6k
0
votes
1
answer
693
views
1
answer
How to check that the reads in two fastq files are in the same order
shortread fastq written 21 months ago by Frocha10 • updated 21 months ago by James W. MacDonald47k
2
votes
3
answers
683
views
3
answers
0
votes
1
answer
677
views
1
answer
Rsamtools installation error
shortread rsamtools written 6.6 years ago by Wolfgang Raffelsberger60 • updated 6.6 years ago by Martin Morgan ♦♦ 22k
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