0
votes
4
answers
2.0k
views
4
answers
convert fastq file to fasta using shortread package
shortread illumina written 2.9 years ago by kelvinfrog750 • updated 2.9 years ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
1.5k
views
1
answer
0
votes
1
answer
1.2k
views
1
answer
readFasta and gzipped FASTA files
shortread written 5.0 years ago by Ivan Gregoretti310 • updated 5.0 years ago by Martin Morgan ♦♦ 21k
4
votes
0
answers
1.1k
views
0
answers
3
votes
1
answer
1.0k
views
1
answer
fastqSampler and writeFastq in shortread package
shortread fastq write written 3.0 years ago by francesca.defilippis40 • updated 3.0 years ago by Martin Morgan ♦♦ 21k
0
votes
2
answers
879
views
2
answers
readFastq, writeFastq, compressed files and unix pipes.
shortread written 5.2 years ago by Ivan Gregoretti310 • updated 5.2 years ago by Martin Morgan ♦♦ 21k
1
vote
6
answers
871
views
6
answers
ShortRead with large fastq files
shortread written 2.7 years ago by danova_fr20
0
votes
1
answer
863
views
1
answer
ShortRead- how to edit the id in a fastq
shortread written 3.1 years ago by newmanss0 • updated 3.1 years ago by Valerie Obenchain ♦♦ 6.4k
1
vote
1
answer
825
views
1
answer
FastqSampler with trimmed paired-end reads
shortread written 2.6 years ago by Arne Muller20 • updated 2.6 years ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
802
views
1
answer
Trouble creating a ShortReadQ object and using writeFastq
preprocessing shortread written 5.0 years ago by Noah Dowell410 • updated 5.0 years ago by Martin Morgan ♦♦ 21k
5
votes
1
answer
761
views
1
answer
Trimming with ShortRead
shortread written 2.9 years ago by cookie20 • updated 2.9 years ago by Martin Morgan ♦♦ 21k
4
votes
1
answer
754
views
1
answer
IRanges/ShortRead causing crash?
biostrings iranges shortread written 2.3 years ago by pavitrarc20 • updated 2.3 years ago by Martin Morgan ♦♦ 21k
3
votes
4
answers
744
views
4
answers
0
votes
1
answer
703
views
1
answer
bioc package installation problem
shortread biocinstaller written 4.9 years ago by carol white680 • updated 4.9 years ago by Dan Tenenbaum ♦♦ 8.2k
1
vote
1
answer
699
views
1
answer
0
votes
1
answer
644
views
1
answer
Error installing Rsamtools
shortread rsamtools written 7.7 years ago by Paul Geeleher1.3k • updated 7.7 years ago by Martin Morgan ♦♦ 21k
0
votes
2
answers
617
views
2
answers
0
votes
1
answer
599
views
1
answer
shortread readAligned with BWA
go shortread written 6.5 years ago by nac280 • updated 6.5 years ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
596
views
1
answer
ShortRead error when reading BAM file
shortread written 6.4 years ago by Alex Gutteridge650 • updated 6.4 years ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
579
views
1
answer
Rsamtools installation error
shortread rsamtools written 6.0 years ago by Wolfgang Raffelsberger60 • updated 6.0 years ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
577
views
1
answer
Finding my un-counted reads
sequencing rtracklayer shortread genomicranges written 4.5 years ago by Sam McInturf300 • updated 4.5 years ago by Valerie Obenchain ♦♦ 6.4k
0
votes
4
answers
574
views
4
answers
read coverage per transcript for RNASeq
rnaseq coverage process shortread written 8.5 years ago by Jessica Hunter40 • updated 8.5 years ago by Martin Morgan ♦♦ 21k
2
votes
3
answers
533
views
3
answers
0
votes
1
answer
532
views
1
answer
0
votes
3
answers
515
views
3
answers
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