4
votes
0
answers
1.3k
views
0
answers
3
votes
4
answers
822
views
4
answers
5
votes
1
answer
975
views
1
answer
Trimming with ShortRead
shortread written 3.3 years ago by cookie20 • updated 3.3 years ago by Martin Morgan ♦♦ 22k
5
votes
2
answers
211
views
2
answers
3
votes
1
answer
1.2k
views
1
answer
fastqSampler and writeFastq in shortread package
shortread fastq write written 3.4 years ago by francesca.defilippis40 • updated 3.4 years ago by Martin Morgan ♦♦ 22k
2
votes
3
answers
635
views
3
answers
1
vote
1
answer
963
views
1
answer
FastqSampler with trimmed paired-end reads
shortread written 3.0 years ago by Arne Muller20 • updated 3.0 years ago by Martin Morgan ♦♦ 22k
1
vote
1
answer
602
views
1
answer
1
vote
1
answer
870
views
1
answer
4
votes
1
answer
834
views
1
answer
IRanges/ShortRead causing crash?
biostrings iranges shortread written 2.7 years ago by pavitrarc20 • updated 2.7 years ago by Martin Morgan ♦♦ 22k
5
votes
1
answer
536
views
1
answer
Using ShortRead (or other) to trim from pattern match onwards
shortread written 2.3 years ago by chapmandu220 • updated 2.3 years ago by Martin Morgan ♦♦ 22k
1
vote
2
answers
385
views
2
answers
FastqStreamer and qualitytype
shortread written 22 months ago by David860
4
votes
2
answers
208
views
2
answers
No BAM option in readAligned from the ShortRead package
shortread nucler bioconductor bam file written 5 months ago by jfgout10 • updated 5 months ago by Dario Strbenac1.4k
4
votes
1
answer
152
views
1
answer
0
votes
1
answer
305
views
1
answer
Vignette for ShortRead
shortread written 10.0 years ago by joseph330 • updated 10.0 years ago by Martin Morgan ♦♦ 22k
0
votes
2
answers
458
views
2
answers
Solexa fastq files and BLAT
cancer biostrings shortread written 9.5 years ago by Daniel Brewer1.8k • updated 9.5 years ago by Martin Morgan ♦♦ 22k
0
votes
0
answers
429
views
0
answers
0
votes
1
answer
394
views
1
answer
0
votes
4
answers
680
views
4
answers
read coverage per transcript for RNASeq
rnaseq coverage process shortread written 8.9 years ago by Jessica Hunter40 • updated 8.9 years ago by Martin Morgan ♦♦ 22k
0
votes
2
answers
459
views
2
answers
pileup function in ShortRead package
alignment shortread written 8.8 years ago by Nora Rieber40 • updated 8.8 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
375
views
1
answer
possible bug in extendReads() in package chipseq
alignment shortread written 8.7 years ago by Nora Rieber40 • updated 8.7 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
397
views
1
answer
ShortRead internal: too many 'snap' entries
shortread written 8.5 years ago by Ramzi TEMANNI160 • updated 8.5 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
374
views
1
answer
Shortread and filtering of duplicate reads
shortread written 8.5 years ago by Johannes Waage50 • updated 8.5 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
386
views
1
answer
ShortRead with BAM
shortread written 8.2 years ago by Duke210 • updated 8.2 years ago by James W. MacDonald46k
0
votes
1
answer
303
views
1
answer
Typo in ?FastqQuality help page?
shortread written 8.2 years ago by Peng Yu940 • updated 8.2 years ago by Martin Morgan ♦♦ 22k
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