4
votes
0
answers
1.2k
views
0
answers
3
votes
4
answers
775
views
4
answers
5
votes
1
answer
825
views
1
answer
Trimming with ShortRead
shortread written 3.1 years ago by cookie20 • updated 3.1 years ago by Martin Morgan ♦♦ 21k
3
votes
1
answer
1.1k
views
1
answer
fastqSampler and writeFastq in shortread package
shortread fastq write written 3.2 years ago by francesca.defilippis40 • updated 3.2 years ago by Martin Morgan ♦♦ 21k
2
votes
3
answers
574
views
3
answers
1
vote
1
answer
889
views
1
answer
FastqSampler with trimmed paired-end reads
shortread written 2.8 years ago by Arne Muller20 • updated 2.8 years ago by Martin Morgan ♦♦ 21k
1
vote
1
answer
556
views
1
answer
1
vote
1
answer
795
views
1
answer
4
votes
1
answer
794
views
1
answer
IRanges/ShortRead causing crash?
biostrings iranges shortread written 2.4 years ago by pavitrarc20 • updated 2.4 years ago by Martin Morgan ♦♦ 21k
5
votes
1
answer
473
views
1
answer
Using ShortRead (or other) to trim from pattern match onwards
shortread written 2.0 years ago by chapmandu220 • updated 2.0 years ago by Martin Morgan ♦♦ 21k
1
vote
2
answers
340
views
2
answers
FastqStreamer and qualitytype
shortread written 19 months ago by David860
4
votes
2
answers
159
views
2
answers
No BAM option in readAligned from the ShortRead package
shortread nucler bioconductor bam file written 9 weeks ago by jfgout10 • updated 9 weeks ago by Dario Strbenac1.4k
4
votes
1
answer
113
views
1
answer
0
votes
1
answer
279
views
1
answer
Vignette for ShortRead
shortread written 9.8 years ago by joseph330 • updated 9.8 years ago by Martin Morgan ♦♦ 21k
0
votes
2
answers
409
views
2
answers
Solexa fastq files and BLAT
cancer biostrings shortread written 9.3 years ago by Daniel Brewer1.8k • updated 9.3 years ago by Martin Morgan ♦♦ 21k
0
votes
0
answers
393
views
0
answers
0
votes
1
answer
356
views
1
answer
0
votes
4
answers
624
views
4
answers
read coverage per transcript for RNASeq
rnaseq coverage process shortread written 8.6 years ago by Jessica Hunter40 • updated 8.6 years ago by Martin Morgan ♦♦ 21k
0
votes
2
answers
437
views
2
answers
pileup function in ShortRead package
alignment shortread written 8.5 years ago by Nora Rieber40 • updated 8.5 years ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
354
views
1
answer
possible bug in extendReads() in package chipseq
alignment shortread written 8.4 years ago by Nora Rieber40 • updated 8.4 years ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
362
views
1
answer
ShortRead internal: too many 'snap' entries
shortread written 8.3 years ago by Ramzi TEMANNI160 • updated 8.3 years ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
341
views
1
answer
Shortread and filtering of duplicate reads
shortread written 8.3 years ago by Johannes Waage50 • updated 8.3 years ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
356
views
1
answer
ShortRead with BAM
shortread written 8.0 years ago by Duke210 • updated 8.0 years ago by James W. MacDonald46k
0
votes
1
answer
280
views
1
answer
Typo in ?FastqQuality help page?
shortread written 7.9 years ago by Peng Yu940 • updated 7.9 years ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
426
views
1
answer
ShortRead information
shortread written 7.9 years ago by Jennifer Dupiot10 • updated 7.9 years ago by Martin Morgan ♦♦ 21k
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