4
votes
0
answers
1.0k
views
0
answers
3
votes
4
answers
689
views
4
answers
5
votes
1
answer
680
views
1
answer
Trimming with ShortRead
shortread written 2.6 years ago by cookie20 • updated 2.6 years ago by Martin Morgan ♦♦ 20k
3
votes
1
answer
911
views
1
answer
fastqSampler and writeFastq in shortread package
shortread fastq write written 2.8 years ago by francesca.defilippis40 • updated 2.8 years ago by Martin Morgan ♦♦ 20k
2
votes
3
answers
482
views
3
answers
1
vote
1
answer
753
views
1
answer
FastqSampler with trimmed paired-end reads
shortread written 2.4 years ago by Arne Muller20 • updated 2.4 years ago by Martin Morgan ♦♦ 20k
1
vote
1
answer
461
views
1
answer
1
vote
1
answer
558
views
1
answer
4
votes
1
answer
684
views
1
answer
IRanges/ShortRead causing crash?
biostrings iranges shortread written 2.0 years ago by pavitrarc20 • updated 2.0 years ago by Martin Morgan ♦♦ 20k
5
votes
1
answer
386
views
1
answer
Using ShortRead (or other) to trim from pattern match onwards
shortread written 19 months ago by chapmandu220 • updated 19 months ago by Martin Morgan ♦♦ 20k
1
vote
2
answers
261
views
2
answers
FastqStreamer and qualitytype
shortread written 14 months ago by David860
0
votes
1
answer
253
views
1
answer
Vignette for ShortRead
shortread written 9.3 years ago by joseph330 • updated 9.3 years ago by Martin Morgan ♦♦ 20k
0
votes
2
answers
335
views
2
answers
Solexa fastq files and BLAT
cancer biostrings shortread written 8.9 years ago by Daniel Brewer1.8k • updated 8.9 years ago by Martin Morgan ♦♦ 20k
0
votes
0
answers
330
views
0
answers
0
votes
1
answer
276
views
1
answer
0
votes
4
answers
504
views
4
answers
read coverage per transcript for RNASeq
rnaseq coverage process shortread written 8.2 years ago by Jessica Hunter40 • updated 8.2 years ago by Martin Morgan ♦♦ 20k
0
votes
2
answers
380
views
2
answers
pileup function in ShortRead package
alignment shortread written 8.1 years ago by Nora Rieber40 • updated 8.1 years ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
311
views
1
answer
possible bug in extendReads() in package chipseq
alignment shortread written 8.0 years ago by Nora Rieber40 • updated 8.0 years ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
305
views
1
answer
ShortRead internal: too many 'snap' entries
shortread written 7.9 years ago by Ramzi TEMANNI150 • updated 7.9 years ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
305
views
1
answer
Shortread and filtering of duplicate reads
shortread written 7.8 years ago by Johannes Waage50 • updated 7.8 years ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
307
views
1
answer
ShortRead with BAM
shortread written 7.6 years ago by Duke210 • updated 7.6 years ago by James W. MacDonald45k
0
votes
1
answer
255
views
1
answer
Typo in ?FastqQuality help page?
shortread written 7.5 years ago by Peng Yu940 • updated 7.5 years ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
326
views
1
answer
ShortRead information
shortread written 7.5 years ago by Jennifer Dupiot10 • updated 7.5 years ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
589
views
1
answer
Error installing Rsamtools
shortread rsamtools written 7.5 years ago by Paul Geeleher1.3k • updated 7.5 years ago by Martin Morgan ♦♦ 20k
0
votes
2
answers
409
views
2
answers
ShortRead QA
sequencing shortread written 7.3 years ago by Alex Gutteridge650 • updated 7.3 years ago by Martin Morgan ♦♦ 20k
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