Showing: shortreadreset
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6
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ShortRead with large fastq files
shortread written 4.1 years ago by danova_fr20
14
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5
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3.3k
views
12 follow
5
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0
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4
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862
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4
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read coverage per transcript for RNASeq
rnaseq coverage process shortread written 9.9 years ago by Jessica Hunter40 • updated 9.9 years ago by Martin Morgan ♦♦ 23k
5
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4
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1.0k
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4
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0
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4
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3.3k
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4
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convert fastq file to fasta using shortread package
shortread illumina written 4.3 years ago by kelvinfrog750 • updated 4.3 years ago by Martin Morgan ♦♦ 23k
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3
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802
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3
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2
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3
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896
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3
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12
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3
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172
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5 follow
3
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0
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2
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665
views
2
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Solexa fastq files and BLAT
cancer biostrings shortread written 10.5 years ago by Daniel Brewer1.9k • updated 6 months ago by Bioconductor Community ♦♦ 0
0
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2
answers
575
views
2
answers
pileup function in ShortRead package
alignment shortread written 9.8 years ago by Nora Rieber40 • updated 9.8 years ago by Martin Morgan ♦♦ 23k
0
votes
2
answers
688
views
2
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ShortRead QA
sequencing shortread written 9.0 years ago by Alex Gutteridge650 • updated 9.0 years ago by Martin Morgan ♦♦ 23k
0
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2
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636
views
2
answers
0
votes
2
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624
views
2
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mismatch & replacement
shortread written 8.7 years ago by Daniel.Berner@unibas.ch90 • updated 8.7 years ago by Harris A. Jaffee590
0
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2
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1.2k
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2
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readFastq, writeFastq, compressed files and unix pipes.
shortread written 6.6 years ago by Ivan Gregoretti310 • updated 6.6 years ago by Martin Morgan ♦♦ 23k
0
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2
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822
views
2
answers
0
votes
2
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629
views
2
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ShortRead summary stats
shortread illumina written 4.3 years ago by danova_fr20
0
votes
2
answers
662
views
2
answers
gcContent error with shortread
shortread written 4.2 years ago by danova_fr20
1
vote
2
answers
533
views
2
answers
FastqStreamer and qualitytype
shortread written 2.9 years ago by David860
0
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2
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574
views
2
answers
4
votes
2
answers
455
views
2
answers
No BAM option in readAligned from the ShortRead package
shortread nucler bioconductor bam file written 17 months ago by jfgout10 • updated 17 months ago by Dario Strbenac1.5k
0
votes
2
answers
245
views
2
answers
0
votes
1
answer
398
views
1
answer
Vignette for ShortRead
shortread written 11.0 years ago by joseph330 • updated 11.0 years ago by Martin Morgan ♦♦ 23k
0
votes
1
answer
497
views
1
answer
0
votes
1
answer
491
views
1
answer
possible bug in extendReads() in package chipseq
alignment shortread written 9.7 years ago by Nora Rieber40 • updated 9.7 years ago by Martin Morgan ♦♦ 23k
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1
answer
492
views
1
answer
ShortRead internal: too many 'snap' entries
shortread written 9.5 years ago by Ramzi TEMANNI160 • updated 9.5 years ago by Martin Morgan ♦♦ 23k
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