Showing: shortreadreset
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6
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ShortRead with large fastq files
shortread written 4.5 years ago by danova_fr20
14
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5
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4.8k
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12 follow
5
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0
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4
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902
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4
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read coverage per transcript for RNASeq
rnaseq coverage process shortread written 10.3 years ago by Jessica Hunter40 • updated 10.3 years ago by Martin Morgan ♦♦ 24k
5
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4
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1.1k
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4
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0
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4
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3.5k
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4
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convert fastq file to fasta using shortread package
shortread illumina written 4.7 years ago by kelvinfrog750 • updated 4.7 years ago by Martin Morgan ♦♦ 24k
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3
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873
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3
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2
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3
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971
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3
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12
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3
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270
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5 follow
3
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0
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2
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745
views
2
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Solexa fastq files and BLAT
cancer biostrings shortread written 10.9 years ago by Daniel Brewer1.9k • updated 11 months ago by Bioconductor Community ♦♦ 0
0
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2
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606
views
2
answers
pileup function in ShortRead package
alignment shortread written 10.2 years ago by Nora Rieber40 • updated 10.2 years ago by Martin Morgan ♦♦ 24k
0
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2
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732
views
2
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ShortRead QA
sequencing shortread written 9.4 years ago by Alex Gutteridge650 • updated 9.4 years ago by Martin Morgan ♦♦ 24k
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2
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673
views
2
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0
votes
2
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669
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2
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mismatch & replacement
shortread written 9.1 years ago by Daniel.Berner@unibas.ch90 • updated 9.1 years ago by Harris A. Jaffee590
0
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2
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1.3k
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2
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readFastq, writeFastq, compressed files and unix pipes.
shortread written 7.0 years ago by Ivan Gregoretti310 • updated 7.0 years ago by Martin Morgan ♦♦ 24k
0
votes
2
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861
views
2
answers
0
votes
2
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675
views
2
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ShortRead summary stats
shortread illumina written 4.7 years ago by danova_fr20
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2
answers
707
views
2
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gcContent error with shortread
shortread written 4.6 years ago by danova_fr20
1
vote
2
answers
594
views
2
answers
FastqStreamer and qualitytype
shortread written 3.3 years ago by David860
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2
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627
views
2
answers
4
votes
2
answers
543
views
2
answers
No BAM option in readAligned from the ShortRead package
shortread nucler bioconductor bam file written 22 months ago by jfgout10 • updated 22 months ago by Dario Strbenac1.5k
0
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2
answers
339
views
2
answers
0
votes
1
answer
424
views
1
answer
Vignette for ShortRead
shortread written 11.4 years ago by joseph330 • updated 11.4 years ago by Martin Morgan ♦♦ 24k
0
votes
1
answer
530
views
1
answer
0
votes
1
answer
520
views
1
answer
possible bug in extendReads() in package chipseq
alignment shortread written 10.1 years ago by Nora Rieber40 • updated 10.1 years ago by Martin Morgan ♦♦ 24k
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1
answer
514
views
1
answer
ShortRead internal: too many 'snap' entries
shortread written 9.9 years ago by Ramzi TEMANNI160 • updated 9.9 years ago by Martin Morgan ♦♦ 24k
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