Showing: shortread • reset
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1
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6
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1.4k
views
6
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ShortRead with large fastq files
shortread written 4.5 years ago by danova_fr • 20
14
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5
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4.8k
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12 follow
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Installing ShortRead - error: zlib not found even with zlib in LD_LIBRARY_PATH
shortread dependency package installation written 19 months ago by joseph.elsherbini • 60 • updated 6 months ago by January Weiner • 240
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4
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902
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4
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read coverage per transcript for RNASeq
rnaseq coverage process shortread written 10.3 years ago by Jessica Hunter • 40 • updated 10.3 years ago by Martin Morgan ♦♦ 24k
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1.1k
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Metagenomic analysis: Aligning ChIPseq data on TSS
chipseq metagenomics convert biomart shortread written 5.2 years ago by patrick.schordert • 30
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4
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3.5k
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4
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convert fastq file to fasta using shortread package
shortread illumina written 4.7 years ago by kelvinfrog75 • 0 • updated 4.7 years ago by Martin Morgan ♦♦ 24k
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3
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873
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3
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NucleR: processReads/solveUserSEW0 - Error
iranges shortread nucler written 8.1 years ago by Stefanie Ververs • 70
2
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3
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971
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3
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ShortRead trim sequence at specific position
shortread fastq written 4.7 years ago by danova_fr • 20
12
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3
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270
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5 follow
3
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No method for coercing this S4 class to a vector, as trying to import my own data rather than using SRA in the workflow RnaSeqGeneEdgeRQL
shortread rsubread rnaseqgeneedgerql written 8 months ago by Raito92 • 40 • updated 8 months ago by Aspie96 • 60
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2
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745
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2
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Solexa fastq files and BLAT
cancer biostrings shortread written 10.9 years ago by Daniel Brewer • 1.9k • updated 11 months ago by Bioconductor Community ♦♦ 0
0
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2
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606
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2
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pileup function in ShortRead package
alignment shortread written 10.2 years ago by Nora Rieber • 40 • updated 10.2 years ago by Martin Morgan ♦♦ 24k
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2
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732
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2
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ShortRead QA
sequencing shortread written 9.4 years ago by Alex Gutteridge • 650 • updated 9.4 years ago by Martin Morgan ♦♦ 24k
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2
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673
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2
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ShortRead for sequencing data quality assessment
sequencing shortread written 9.2 years ago by heyi xiao • 360
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2
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669
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2
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mismatch & replacement
shortread written 9.1 years ago by Daniel.Berner@unibas.ch • 90 • updated 9.1 years ago by Harris A. Jaffee • 590
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2
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1.3k
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2
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readFastq, writeFastq, compressed files and unix pipes.
shortread written 7.0 years ago by Ivan Gregoretti • 310 • updated 7.0 years ago by Martin Morgan ♦♦ 24k
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2
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861
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2
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Affect ShortRead readAligned behavior with ScanBamParam's reverseComplement parameter
shortread readaligned reversecomplement scanbamparam written 4.9 years ago by jdavison • 10
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2
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675
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2
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ShortRead summary stats
shortread illumina written 4.7 years ago by danova_fr • 20
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2
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707
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2
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gcContent error with shortread
shortread written 4.6 years ago by danova_fr • 20
1
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2
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594
views
2
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FastqStreamer and qualitytype
shortread written 3.3 years ago by David • 860
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2
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627
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2
answers
readFastq error reading Nanopore fastq
shortread written 2.3 years ago by kamal.fartiyal84 • 10
4
votes
2
answers
543
views
2
answers
No BAM option in readAligned from the ShortRead package
shortread nucler bioconductor bam file written 22 months ago by jfgout • 10 • updated 22 months ago by Dario Strbenac • 1.5k
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2
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339
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2
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Retrieving specific sequences from a fastq
biostrings shortread written 14 months ago by ferbecneu • 0
0
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1
answer
424
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1
answer
Vignette for ShortRead
shortread written 11.4 years ago by joseph • 330 • updated 11.4 years ago by Martin Morgan ♦♦ 24k
0
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1
answer
530
views
1
answer
Problems reading multiple MAQ map files with ShortRead ReadAligned
cancer process shortread charm written 10.7 years ago by Martin Morgan ♦♦ 24k
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1
answer
520
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1
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possible bug in extendReads() in package chipseq
alignment shortread written 10.1 years ago by Nora Rieber • 40 • updated 10.1 years ago by Martin Morgan ♦♦ 24k
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1
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514
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1
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ShortRead internal: too many 'snap' entries
shortread written 9.9 years ago by Ramzi TEMANNI • 160 • updated 9.9 years ago by Martin Morgan ♦♦ 24k
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