Showing: shortread • reset
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1
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6
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1.3k
views
6
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ShortRead with large fastq files
shortread written 4.1 years ago by danova_fr • 20
14
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5
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12 follow
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Installing ShortRead - error: zlib not found even with zlib in LD_LIBRARY_PATH
shortread dependency package installation written 14 months ago by joseph.elsherbini • 60 • updated 7 weeks ago by January Weiner • 240
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4
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862
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4
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read coverage per transcript for RNASeq
rnaseq coverage process shortread written 9.9 years ago by Jessica Hunter • 40 • updated 9.9 years ago by Martin Morgan ♦♦ 23k
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Metagenomic analysis: Aligning ChIPseq data on TSS
chipseq metagenomics convert biomart shortread written 4.8 years ago by patrick.schordert • 30
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4
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3.3k
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4
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convert fastq file to fasta using shortread package
shortread illumina written 4.3 years ago by kelvinfrog75 • 0 • updated 4.3 years ago by Martin Morgan ♦♦ 23k
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3
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802
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3
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NucleR: processReads/solveUserSEW0 - Error
iranges shortread nucler written 7.7 years ago by Stefanie Ververs • 70
2
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3
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896
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3
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ShortRead trim sequence at specific position
shortread fastq written 4.3 years ago by danova_fr • 20
12
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3
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172
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5 follow
3
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No method for coercing this S4 class to a vector, as trying to import my own data rather than using SRA in the workflow RnaSeqGeneEdgeRQL
shortread rsubread rnaseqgeneedgerql written 3 months ago by Raito92 • 40 • updated 3 months ago by Aspie96 • 60
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2
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665
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2
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Solexa fastq files and BLAT
cancer biostrings shortread written 10.5 years ago by Daniel Brewer • 1.9k • updated 6 months ago by Bioconductor Community ♦♦ 0
0
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2
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575
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2
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pileup function in ShortRead package
alignment shortread written 9.8 years ago by Nora Rieber • 40 • updated 9.8 years ago by Martin Morgan ♦♦ 23k
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2
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688
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2
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ShortRead QA
sequencing shortread written 9.0 years ago by Alex Gutteridge • 650 • updated 9.0 years ago by Martin Morgan ♦♦ 23k
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2
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636
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2
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ShortRead for sequencing data quality assessment
sequencing shortread written 8.8 years ago by heyi xiao • 360
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2
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624
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2
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mismatch & replacement
shortread written 8.7 years ago by Daniel.Berner@unibas.ch • 90 • updated 8.7 years ago by Harris A. Jaffee • 590
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2
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1.2k
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2
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readFastq, writeFastq, compressed files and unix pipes.
shortread written 6.6 years ago by Ivan Gregoretti • 310 • updated 6.6 years ago by Martin Morgan ♦♦ 23k
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2
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822
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2
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Affect ShortRead readAligned behavior with ScanBamParam's reverseComplement parameter
shortread readaligned reversecomplement scanbamparam written 4.5 years ago by jdavison • 10
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2
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629
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2
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ShortRead summary stats
shortread illumina written 4.3 years ago by danova_fr • 20
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2
answers
662
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2
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gcContent error with shortread
shortread written 4.2 years ago by danova_fr • 20
1
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2
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533
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2
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FastqStreamer and qualitytype
shortread written 2.9 years ago by David • 860
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2
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574
views
2
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readFastq error reading Nanopore fastq
shortread written 23 months ago by kamal.fartiyal84 • 10
4
votes
2
answers
455
views
2
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No BAM option in readAligned from the ShortRead package
shortread nucler bioconductor bam file written 17 months ago by jfgout • 10 • updated 17 months ago by Dario Strbenac • 1.5k
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2
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245
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2
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Retrieving specific sequences from a fastq
biostrings shortread written 9 months ago by ferbecneu • 0
0
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1
answer
398
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1
answer
Vignette for ShortRead
shortread written 11.0 years ago by joseph • 330 • updated 11.0 years ago by Martin Morgan ♦♦ 23k
0
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1
answer
497
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1
answer
Problems reading multiple MAQ map files with ShortRead ReadAligned
cancer process shortread charm written 10.3 years ago by Martin Morgan ♦♦ 23k
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1
answer
491
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1
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possible bug in extendReads() in package chipseq
alignment shortread written 9.7 years ago by Nora Rieber • 40 • updated 9.7 years ago by Martin Morgan ♦♦ 23k
0
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1
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492
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1
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ShortRead internal: too many 'snap' entries
shortread written 9.5 years ago by Ramzi TEMANNI • 160 • updated 9.5 years ago by Martin Morgan ♦♦ 23k
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