Showing: shortreadreset
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Trimming with ShortRead
shortread written 4.3 years ago by cookie20 • updated 4.3 years ago by Martin Morgan ♦♦ 23k
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fastq upload time
shortread written 8.8 years ago by Daniel.Berner@unibas.ch90 • updated 8.8 years ago by Sean Davis21k
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ShortRead with large fastq files
shortread written 4.1 years ago by danova_fr20
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453
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No BAM option in readAligned from the ShortRead package
shortread nucler bioconductor bam file written 17 months ago by jfgout10 • updated 17 months ago by Dario Strbenac1.5k
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Finding my un-counted reads
sequencing rtracklayer shortread genomicranges written 5.9 years ago by Sam McInturf300 • updated 5.9 years ago by Valerie Obenchain6.7k
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fastqSampler and writeFastq in shortread package
shortread fastq write written 4.4 years ago by francesca.defilippis60 • updated 4.4 years ago by Martin Morgan ♦♦ 23k
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IRanges/ShortRead causing crash?
biostrings iranges shortread written 3.7 years ago by pavitrarc20 • updated 3.7 years ago by Martin Morgan ♦♦ 23k
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Using ShortRead (or other) to trim from pattern match onwards
shortread written 3.3 years ago by chapmandu220 • updated 3.3 years ago by Martin Morgan ♦♦ 23k
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strsplit method for DNAStringSet objects
biostrings shortread written 2.3 years ago by jma199130 • updated 2.3 years ago by Hervé Pagès ♦♦ 14k
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228
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Remove reads from raw fastq
biostrings shortread written 8 months ago by ferbecneu0 • updated 8 months ago by Gordon Smyth37k
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398
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1
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Vignette for ShortRead
shortread written 11.0 years ago by joseph330 • updated 11.0 years ago by Martin Morgan ♦♦ 23k
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660
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Solexa fastq files and BLAT
cancer biostrings shortread written 10.5 years ago by Daniel Brewer1.9k • updated 6 months ago by Bioconductor Community ♦♦ 0
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554
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0
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575
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pileup function in ShortRead package
alignment shortread written 9.8 years ago by Nora Rieber40 • updated 9.8 years ago by Martin Morgan ♦♦ 23k
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491
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possible bug in extendReads() in package chipseq
alignment shortread written 9.7 years ago by Nora Rieber40 • updated 9.7 years ago by Martin Morgan ♦♦ 23k
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492
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ShortRead internal: too many 'snap' entries
shortread written 9.5 years ago by Ramzi TEMANNI160 • updated 9.5 years ago by Martin Morgan ♦♦ 23k
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527
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Shortread and filtering of duplicate reads
shortread written 9.5 years ago by Johannes Waage50 • updated 9.5 years ago by Martin Morgan ♦♦ 23k
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499
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ShortRead with BAM
shortread written 9.2 years ago by Duke210 • updated 9.2 years ago by James W. MacDonald50k
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383
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Typo in ?FastqQuality help page?
shortread written 9.2 years ago by Peng Yu940 • updated 9.2 years ago by Martin Morgan ♦♦ 23k
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