Showing: shortreadreset
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12 follow
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convert fastq file to fasta using shortread package
shortread illumina written 4.6 years ago by kelvinfrog750 • updated 4.6 years ago by Martin Morgan ♦♦ 23k
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readFasta and gzipped FASTA files
shortread written 6.7 years ago by Ivan Gregoretti310 • updated 6.7 years ago by Martin Morgan ♦♦ 23k
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fastqSampler and writeFastq in shortread package
shortread fastq write written 4.7 years ago by francesca.defilippis60 • updated 4.7 years ago by Martin Morgan ♦♦ 23k
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Trimming with ShortRead
shortread written 4.5 years ago by cookie20 • updated 4.5 years ago by Martin Morgan ♦♦ 23k
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ShortRead- how to edit the id in a fastq
shortread written 4.8 years ago by newmanss0 • updated 4.8 years ago by Valerie Obenchain6.7k
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ShortRead with large fastq files
shortread written 4.4 years ago by danova_fr20
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Trouble creating a ShortReadQ object and using writeFastq
preprocessing shortread written 6.7 years ago by Noah Dowell410 • updated 6.7 years ago by Martin Morgan ♦♦ 23k
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readFastq, writeFastq, compressed files and unix pipes.
shortread written 6.8 years ago by Ivan Gregoretti310 • updated 6.8 years ago by Martin Morgan ♦♦ 23k
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1
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1.2k
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FastqSampler with trimmed paired-end reads
shortread written 4.3 years ago by Arne Muller20 • updated 4.3 years ago by Martin Morgan ♦♦ 23k
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1
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1.2k
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bioc package installation problem
shortread biocinstaller written 6.5 years ago by carol white680 • updated 6.5 years ago by Dan Tenenbaum8.2k
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How to check that the reads in two fastq files are in the same order
shortread fastq written 2.8 years ago by Frocha10 • updated 2.8 years ago by James W. MacDonald51k
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Error installing Rsamtools
shortread rsamtools written 9.4 years ago by Paul Geeleher1.3k • updated 9.4 years ago by Martin Morgan ♦♦ 23k
4
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1
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1.1k
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IRanges/ShortRead causing crash?
biostrings iranges shortread written 3.9 years ago by pavitrarc20 • updated 3.9 years ago by Martin Morgan ♦♦ 23k
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4
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2
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3
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3
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0
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1
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Rsamtools installation error
shortread rsamtools written 7.7 years ago by Wolfgang Raffelsberger60 • updated 7.7 years ago by Martin Morgan ♦♦ 23k
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906
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ShortRead error when reading BAM file
shortread written 8.1 years ago by Alex Gutteridge650 • updated 8.1 years ago by Martin Morgan ♦♦ 23k
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4
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889
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4
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read coverage per transcript for RNASeq
rnaseq coverage process shortread written 10.1 years ago by Jessica Hunter40 • updated 10.1 years ago by Martin Morgan ♦♦ 23k
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878
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1
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shortread readAligned with BWA
go shortread written 8.2 years ago by nac280 • updated 8.2 years ago by Martin Morgan ♦♦ 23k
5
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1
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863
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1
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Using ShortRead (or other) to trim from pattern match onwards
shortread written 3.5 years ago by chapmandu220 • updated 3.5 years ago by Martin Morgan ♦♦ 23k
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1
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859
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1
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Finding my un-counted reads
sequencing rtracklayer shortread genomicranges written 6.1 years ago by Sam McInturf300 • updated 6.1 years ago by Valerie Obenchain6.7k
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