Showing: shortreadreset
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Trimming with ShortRead
shortread written 4.7 years ago by cookie20 • updated 4.7 years ago by Martin Morgan ♦♦ 24k
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fastqSampler and writeFastq in shortread package
shortread fastq write written 4.8 years ago by francesca.defilippis60 • updated 4.8 years ago by Martin Morgan ♦♦ 24k
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FastqSampler with trimmed paired-end reads
shortread written 4.5 years ago by Arne Muller20 • updated 4.5 years ago by Martin Morgan ♦♦ 24k
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IRanges/ShortRead causing crash?
biostrings iranges shortread written 4.1 years ago by pavitrarc20 • updated 4.1 years ago by Martin Morgan ♦♦ 24k
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893
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Using ShortRead (or other) to trim from pattern match onwards
shortread written 3.7 years ago by chapmandu220 • updated 3.7 years ago by Martin Morgan ♦♦ 24k
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2
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594
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FastqStreamer and qualitytype
shortread written 3.3 years ago by David860
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543
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No BAM option in readAligned from the ShortRead package
shortread nucler bioconductor bam file written 22 months ago by jfgout10 • updated 22 months ago by Dario Strbenac1.5k
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error: incorrect number of fields (1) input.bam:1
shortread readaligned written 11 months ago by kspata10 • updated 11 months ago by Martin Morgan ♦♦ 24k
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270
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Vignette for ShortRead
shortread written 11.4 years ago by joseph330 • updated 11.4 years ago by Martin Morgan ♦♦ 24k
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745
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Solexa fastq files and BLAT
cancer biostrings shortread written 10.9 years ago by Daniel Brewer1.9k • updated 11 months ago by Bioconductor Community ♦♦ 0
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read coverage per transcript for RNASeq
rnaseq coverage process shortread written 10.3 years ago by Jessica Hunter40 • updated 10.3 years ago by Martin Morgan ♦♦ 24k
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606
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pileup function in ShortRead package
alignment shortread written 10.2 years ago by Nora Rieber40 • updated 10.2 years ago by Martin Morgan ♦♦ 24k
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1
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520
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1
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possible bug in extendReads() in package chipseq
alignment shortread written 10.1 years ago by Nora Rieber40 • updated 10.1 years ago by Martin Morgan ♦♦ 24k
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514
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ShortRead internal: too many 'snap' entries
shortread written 9.9 years ago by Ramzi TEMANNI160 • updated 9.9 years ago by Martin Morgan ♦♦ 24k
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Shortread and filtering of duplicate reads
shortread written 9.9 years ago by Johannes Waage50 • updated 9.9 years ago by Martin Morgan ♦♦ 24k
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