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Comment: Annotation for EPICv2
by
shepherl
4.0k
Don't know if any of these are of use or if these are what ChAMP uses under the hood: [IlluminaHumanMethylationEPICv2anno.20a1.hg38](https…
Comment: minfi support of illumina Infinium methylationEPIC v2.0
by
wl_xxz
• 0
Hello James! Is there an annotation package for the latest EPICv2 A2 sub-version? If not, I am happy to make one by modifying the existing …
Comment: Highly DE genes but small count difference within conditions
by
bioshot.com
• 0
Thanks for the suggestions. I simplified the model to *design=~genotype*. I tried both with and without *lfcshrinkage* and I am not finding…
Comment: Spectra and PSMatch- trouble in reducePSMs, joinSpectraData, or countIdentificat
by
Laurent Gatto
1.6k
Hmm, it is a bit surprising that you have so many the same scores. I would try to look at the actual spectra, and check the matching peaks,…
Comment: How to control batch effect if Group and batch are same?
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ATpoint
★ 4.5k
Spam is strong in here.
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Answer: edgeR 4.2.1 compression bug: a minimally reproducible snippet
Trying to use enrichGO
Answer: edgeR 4.2.1 compression bug: a minimally reproducible snippet
Answer: dmpFinder for other objects
GSVA ssGSEA vs. Broad implementation of ssGSEA
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