Showing: siggenesreset
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Limma, SAM and Fold Change Calculation
affy limma gcrma siggenes written 12.3 years ago by Peter White80 • updated 2.5 years ago by Gordon Smyth38k
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SAM analysis : samr package vs siggenes package
siggenes written 11.5 years ago by Cécile Laurent30 • updated 11.5 years ago by Holger Schwender900
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Yet another nested design in limma
affy limma siggenes factdesign maanova written 10.5 years ago by Gordon Smyth38k • updated 10.4 years ago by Paolo Innocenti320
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How is fold change reported in the samr output?
siggenes impute written 9.1 years ago by brian snail20 • updated 9.1 years ago by James W. MacDonald51k
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samr - extract genes from siggenes.table
siggenes written 8.7 years ago by Assa Yeroslaviz1.4k • updated 8.7 years ago by Manca Marco PATH340
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Bug in topGO-package [topGO_1.10.0: GenTable-function]
go hgu133plus2 siggenes written 10.9 years ago by Samuel Wuest330 • updated 10.9 years ago by Adrian Alexa400
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hyperGTest, KEGG
annotation pathways multtest siggenes rbgl gostats written 12.5 years ago by ivan.borozan@utoronto.ca80 • updated 12.5 years ago by Seth Falcon7.4k
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Could you help me
siggenes written 14.7 years ago by Liao, Guiping10 • updated 14.7 years ago by Holger Schwender900
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Help with GSEA package
hu6800 cdf genefilter multtest affy gcrma siggenes annaffy gseabase written 8.9 years ago by Jillian Rowe20 • updated 8.9 years ago by Martin Morgan ♦♦ 23k
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runSPIA() in graphite package
pathways breast siggenes process cycle graphite written 6.7 years ago by array chip360 • updated 6.7 years ago by Enrica20
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SAM output explanation and an FDR question
siggenes written 13.8 years ago by Ettinger, Nicholas110 • updated 13.8 years ago by Naomi Altman6.0k
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warning messages in gcrma
microarray normalization cancer moe430a moe430b cdf probe affy gcrma siggenes genespring written 15.6 years ago by Lizhe Xu210 • updated 15.6 years ago by James W. MacDonald51k
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normalisation + sam
preprocessing siggenes written 9.5 years ago by Mike Dewar60 • updated 9.5 years ago by Wolfgang Huber13k
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SAM analysis of two color microarray data
normalization limma siggenes written 5.1 years ago by Guest User12k • updated 5.1 years ago by James W. MacDonald51k
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samr package problems significant genes
siggenes written 10.0 years ago by Assa Yeroslaviz1.4k • updated 9.9 years ago by Elana Fertig10
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Unexpected results of differential expression analysis
go limma siggenes written 6.3 years ago by Guest User12k • updated 6.3 years ago by Wolfgang Huber13k
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miRNA microarray analysis
mirna affy siggenes written 8.4 years ago by Assa Yeroslaviz1.4k
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understanding siggenes results
mirna affy siggenes written 8.4 years ago by Assa Yeroslaviz1.4k • updated 8.4 years ago by James W. MacDonald51k
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