Showing: single cell • reset
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normalization for infected homogenious cell populations
normalization single cell scran written 28 days ago by jcvera • 0 • updated 27 days ago by Aaron Lun • 23k
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What are the methods to get count data per cell from single cell fastq given only R1, R2, and I1 fastq files
single cell fastq written 5 weeks ago by Matthew Thornton • 300 • updated 5 weeks ago by Gordon Smyth ♦ 37k
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How can I compute AIC for MAST hurdle model fitted in the whole dataset?
single cell parameters mast aic calcuation hurdle model written 10 weeks ago by mcalgaro93 • 0
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5 follow
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ZINB-WaVE + DESeq2 misses low-expressed, single-condition genes that look like they should be markers
deseq2 differential expression rna-seq single cell zinb-wave written 8 months ago by rory.kirchner • 60 • updated 8 months ago by Michael Love ♦ 22k
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Job: Postdoctoral position, T follicular helper cell transcriptomics
rnaseq job single cell immunology t cells tfh cells written 10 months ago by michela.locci • 0
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another contrast question - edgeR + scRNA-seq + timecourse
timecourse edger design and contrast matrix single cell written 10 months ago by regan.hayward • 0 • updated 10 months ago by Gordon Smyth ♦ 37k
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splatter simulating paths
single cell splatter written 12 months ago by nikolaspapadop • 10
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News: SCANGEN: Single-cell cancer genomics workshop at ISMB 2018
news statistics single cell cancer genomics written 12 months ago by kieranrcampbell • 30
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BASiCS spike info for single cell RNA sequences or Bayesian statistics help
bayesian single cell scrnaseq basics written 14 months ago by alexandriapinto1 • 10 • updated 14 months ago by CataVallejos • 10
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Job: Post-doc / Research Engineer Position: single cell RNAseq R/Perl applications development, IPMC, Sophia Antipolis, France
job single cell written 15 months ago by Agnes Paquet • 10
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Job: Scientific Programmer - Cambridge, UK
job single cell c++ software engineer written 17 months ago by Aaron Lun • 23k
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SC3 gene clusters
single cell tutorial single-cell sc3 written 18 months ago by ahmed.elewa • 20 • updated 18 months ago by Martin Morgan ♦♦ 23k
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SingleCellExperiment function in SingleCellExperiment package returns error (when reproducing example)
R bioconductor single cell singlecellexperiment written 18 months ago by Walter F. Baumann • 10 • updated 18 months ago by lahrmannu • 0
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Regarding scRNA seq vs Bulk RNA seq
rnaseq single cell written 19 months ago by naman.sep • 0 • updated 19 months ago by galib36 • 10
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Does it make sense to consider RUVr normalization for single cell RNA analysis?
ruvseq single cell ruv ruvnormalize ruvr written 20 months ago by Nik Tuzov • 70
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Cell type specific cell markers for Seurat based analysis.
clustering single cell seurat written 21 months ago by hrishi27n • 20 • updated 21 months ago by ankur.chakravarthy.10 • 40
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Batch effects and model matrices
deseq2 single cell monocle written 22 months ago by bvernot • 0 • updated 22 months ago by Michael Love ♦ 22k
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Single cells batch effects
single cell batch effect ruv written 2.1 years ago by riccardo • 70
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sc3_prepare function error
single cell single-cell scater sc3 written 2.2 years ago by Assa Yeroslaviz • 1.4k • updated 2.2 years ago by Vladimir Kiselev • 150
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SC3 with latent variable corrected counts
single cell sc3 written 2.5 years ago by Mark • 10 • updated 2.5 years ago by Vladimir Kiselev • 150
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News: Ascona Workshop 2017 - Statistical Challenges in Single-Cell Biology: Deadline on 20 January
news conference single cell statistical modeling written 2.5 years ago by Wolfgang Huber ♦ 13k
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Tutorial: Workflow for low-level analysis of single-cell RNA-seq data
single cell tutorial scran scater written 2.6 years ago by Aaron Lun • 23k
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6 follow
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Disagreement between TMM (edgeR) and RLE (DESeq) normalisation for single-cell data
rnaseq normalization edger deseq2 single cell written 2.6 years ago by kieranrcampbell • 30 • updated 2.6 years ago by Aaron Lun • 23k
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SCDE for differential expression
differential expression single cell scde written 2.7 years ago by mnaymik • 10
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Job: Bioinformatics position at the Department of Genetics, Stanford, California
job rna-seq chip-seq single cell next-generation sequencing written 3.0 years ago by Katja Hebestreit • 110
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