Showing: single cell • reset
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3
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2
answers
61
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2
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Different number of marker genes between same clusters
single cell de clusters sce markers written 19 days ago by ludmi.b • 0
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Job: Post-doc fellow - Aparicio Lab
sequencing job bioinformatics single cell genome written 25 days ago by jmaanaki • 0
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104
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Job: Post-doctoral Fellowship at BC Cancer Research Center, Vancouver BC
job rna bioinformatics single cell data analysis written 3 months ago by jmaanaki • 0
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Job: Post-doctoral Fellow - Aparicio Lab @ BC Cancer Research Center, Vancouver BC Canada
cancer job single cell genome written 4 months ago by jmaanaki • 0
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1
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117
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1
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Celaref error relating to MAST DE ananlysis
software error rna-seq single cell celaref written 5 months ago by hamid.bolouri • 0 • updated 4 months ago by sarah.williams1 • 20
2
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1
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175
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1
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normalization for infected homogenious cell populations
normalization single cell scran written 6 months ago by jcvera • 0 • updated 6 months ago by Aaron Lun • 25k
7
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3
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What are the methods to get count data per cell from single cell fastq given only R1, R2, and I1 fastq files
single cell fastq written 7 months ago by Matthew Thornton • 320 • updated 7 months ago by Gordon Smyth ♦ 38k
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How can I compute AIC for MAST hurdle model fitted in the whole dataset?
single cell parameters mast aic calcuation hurdle model written 8 months ago by mcalgaro93 • 0
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1
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ZINB-WaVE + DESeq2 misses low-expressed, single-condition genes that look like they should be markers
deseq2 differential expression rna-seq single cell zinb-wave written 14 months ago by rory.kirchner • 60 • updated 14 months ago by Michael Love ♦ 25k
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Job: Postdoctoral position, T follicular helper cell transcriptomics
rnaseq job single cell immunology t cells tfh cells written 16 months ago by michela.locci • 0
2
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1
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356
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1
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another contrast question - edgeR + scRNA-seq + timecourse
timecourse edger design and contrast matrix single cell written 16 months ago by regan.hayward • 0 • updated 16 months ago by Gordon Smyth ♦ 38k
2
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1
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323
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1
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splatter simulating paths
single cell splatter written 18 months ago by nikolaspapadop • 10
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342
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News: SCANGEN: Single-cell cancer genomics workshop at ISMB 2018
news statistics single cell cancer genomics written 18 months ago by kieranrcampbell • 30
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1
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348
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1
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BASiCS spike info for single cell RNA sequences or Bayesian statistics help
bayesian single cell scrnaseq basics written 20 months ago by alexandriapinto1 • 10 • updated 20 months ago by CataVallejos • 10
0
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Job: Post-doc / Research Engineer Position: single cell RNAseq R/Perl applications development, IPMC, Sophia Antipolis, France
job single cell written 21 months ago by Agnes Paquet • 10
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Job: Scientific Programmer - Cambridge, UK
job single cell c++ software engineer written 23 months ago by Aaron Lun • 25k
4
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1
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547
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1
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SC3 gene clusters
single cell tutorial single-cell sc3 written 24 months ago by ahmed.elewa • 20 • updated 24 months ago by Martin Morgan ♦♦ 23k
3
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SingleCellExperiment function in SingleCellExperiment package returns error (when reproducing example)
R bioconductor single cell singlecellexperiment written 24 months ago by Walter F. Baumann • 10 • updated 24 months ago by lahrmannu • 0
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Regarding scRNA seq vs Bulk RNA seq
rnaseq single cell written 2.1 years ago by naman.sep • 0 • updated 2.1 years ago by galib36 • 10
1
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1
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896
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1
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Does it make sense to consider RUVr normalization for single cell RNA analysis?
ruvseq single cell ruv ruvnormalize ruvr written 2.2 years ago by Nik Tuzov • 70
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Cell type specific cell markers for Seurat based analysis.
clustering single cell seurat written 2.3 years ago by hrishi27n • 20 • updated 2.3 years ago by ankur.chakravarthy.10 • 40
0
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1
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517
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Batch effects and model matrices
deseq2 single cell monocle written 2.3 years ago by bvernot • 0 • updated 2.3 years ago by Michael Love ♦ 25k
3
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1.6k
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2
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Single cells batch effects
single cell batch effect ruv written 2.5 years ago by ribioinfo • 90
2
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1
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766
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1
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sc3_prepare function error
single cell single-cell scater sc3 written 2.7 years ago by Assa Yeroslaviz • 1.4k • updated 2.7 years ago by Vladimir Kiselev • 150
3
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1
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654
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1
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SC3 with latent variable corrected counts
single cell sc3 written 3.0 years ago by Mark • 10 • updated 3.0 years ago by Vladimir Kiselev • 150
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