Showing: singlecellexperiment • reset
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scater cbind for singlecellexperiment objects problem
scater singlecellexperiment written 19 days ago by santos22903 • 0 • updated 19 days ago by Aaron Lun • 25k
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129
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PCA outliers cleaning
pipeline scrnaseq seurat singlecellexperiment written 5 weeks ago by albadrs.93 • 10
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277
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single cell data: adding random effects for subject with multilevel experiment design
limma scran simplesinglecell singlecellexperiment written 6 months ago by Matt Mulé • 0 • updated 6 months ago by Aaron Lun • 25k
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194
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Unable to change point size in plotExpression()
scater singlecellexperiment plotexpression plotting written 8 months ago by kushshah • 10 • updated 8 months ago by Aaron Lun • 25k
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437
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ERROR - Size factors should be positive real numbers (using normalize() function)
qc scran scater singlecellexperiment normalize written 8 months ago by kushshah • 10
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Combining and using 10x Genomics output in SingleCellExperiment Objects
singlecellexperiment written 8 months ago by Matthew Thornton • 330 • updated 8 months ago by Aaron Lun • 25k
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Bioconductor with RPKM counts or Raw counts
normalization rpkm qc singlecellexperiment written 8 months ago by kushshah • 10 • updated 8 months ago by Aaron Lun • 25k
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265
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Getting CDSCHROM values from ENSEMBL/SYMBOL keys using mapIds from TxDb.Hsapiens.UCSC.hg19.knownGene
annotationdbi ensembl org.hs.eg.db singlecellexperiment cdschrom written 8 months ago by kushshah • 10 • updated 8 months ago by James W. MacDonald ♦ 52k
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How to work with dplyr verbs in the colData slot of SingleCellExperiment objects?
singlecellexperiment written 10 months ago by ramonmassoni • 10 • updated 10 months ago by Martin Morgan ♦♦ 24k
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How to best represent weights in SummarizedExperiment or SingleCellExperiment?
summarizedexperiment singlecellexperiment written 11 months ago by Paul Harrison • 70 • updated 11 months ago by davide risso • 830
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removing rows from SingleCellExperiment container
subsetting scrnaseq sce singlecellexperiment written 11 months ago by TJ • 0 • updated 11 months ago by Aaron Lun • 25k
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Deconvolution Method in Seurat and convert from SingleCellExperiment
rnaseq scater seurat singlecellexperiment written 12 months ago by hamza_karakurt • 30 • updated 12 months ago by Gordon Smyth ♦ 39k
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How to resolve these trendVar() warnings and errors
scran scater singlecellexperiment written 12 months ago by Abhishek Singh • 20 • updated 12 months ago by Aaron Lun • 25k
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281
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plotPlatePosition and plate_position
R scater singlecellexperiment written 12 months ago by TJ • 0 • updated 12 months ago by Aaron Lun • 25k
3
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Seurat to SingleCellExperiment Converting error in MAC
rnaseq single-cell singlecellexperiment written 13 months ago by hamza_karakurt • 30 • updated 13 months ago by Steve Lianoglou ♦ 12k
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Recommendations for combining multiple 10x runs into one SingleCellExperiment
simplesinglecell singlecellexperiment dropletutils written 14 months ago by Peter Hickey • 460 • updated 14 months ago by Aaron Lun • 25k
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newSCESet and SingleCellExperiment basic differences and TMM Normalization
rnaseq single-cell scater seurat singlecellexperiment written 14 months ago by hamza_karakurt • 30
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Merging RNAseq Datasets of Different Depths
batch effect scran scrnaseq singlecellexperiment sequencing depth written 18 months ago by liam.salleh • 0 • updated 18 months ago by Aaron Lun • 25k
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Conversion to SingleCellExperiment from Seurat objects
seurat singlecellexperiment written 19 months ago by Wolfgang Huber ♦ 13k
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346
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Accessing normalized counts
scater splatter singlecellexperiment written 20 months ago by luke.zappia • 50
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Warning: negative size factors
scran scater singlecellexperiment size factor negative written 21 months ago by Marina V.V. • 0 • updated 21 months ago by Aaron Lun • 25k
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656
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SingleCellExperiment object cannot be used by Scater package?
scater simplesinglecell singlecellexperiment written 22 months ago by Xingyu • 0 • updated 22 months ago by Aaron Lun • 25k
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Error: In seq_len(ncol(assay)) : first element used of 'length.out' argument
singlecellexperiment written 22 months ago by Marina V.V. • 0
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Raw count data for SC3 and SingleCellExperiment set problem
scater sc3 singlecellexperiment written 2.1 years ago by chengyuzou • 10 • updated 2.1 years ago by Vladimir Kiselev • 150
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Cannot create SingleCellExperiment object
singlecellexperiment written 2.1 years ago by Shian Su • 20 • updated 2.1 years ago by Aaron Lun • 25k
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