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Good way to get location of in-del SNPs in UCSC coordinates?
snp snplocs written 5.0 years ago by garrisrg • 10
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4
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how to modify a Biostrings object
snplocs written 10.9 years ago by Paul Shannon • 1.1k • updated 10.8 years ago by Hervé Pagès ♦♦ 14k
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659
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About the bioconductor package SNPlocs.Hsapiens.dbSNP.20071016.
snp cancer snplocs written 10.8 years ago by Hervé Pagès ♦♦ 14k
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431
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other human genomes, other SNP sets?
sequencing bsgenome snplocs written 10.8 years ago by Paul Shannon • 1.1k
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3
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964
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dbSNP build for R package SNPlocs.Hsapiens.dbSNP.20080617
snp cancer snplocs written 10.5 years ago by Hervé Pagès ♦♦ 14k • updated 4.4 years ago by genefan • 0
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How to find SNP names
snp homo sapiens snplocs written 10.5 years ago by Kay Jaja • 90 • updated 10.5 years ago by Hervé Pagès ♦♦ 14k
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325
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1
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Fwd: cannot install SNPlocs.Hsapiens.dbSNP.20090506
snplocs written 9.9 years ago by Sean Davis ♦ 21k • updated 9.9 years ago by Dan Strumpf • 70
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640
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1
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New SNPlocs data package for Human (dbSNP BUILD 131)
cancer bsgenome snplocs written 9.6 years ago by Hervé Pagès ♦♦ 14k
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723
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RE : maping SNPs; first foundation challenge offered
snp annotation cancer snplocs transcriptdb biomart genomicfeatures written 9.0 years ago by Vincent J. Carey, Jr. ♦ 6.3k
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809
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RE : RE : maping SNPs
snp snplocs transcriptdb iranges genomicfeatures written 8.9 years ago by SimonNoël • 450 • updated 8.9 years ago by Valerie Obenchain • 6.7k
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681
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1
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seqnames on dbSNP object error
snplocs written 8.7 years ago by Mark Cowley • 910 • updated 8.7 years ago by Hervé Pagès ♦♦ 14k
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2
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765
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2
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Probe ID to Sequence
snplocs genomicranges written 8.4 years ago by khadeeja ismail • 400 • updated 8.4 years ago by Tim Triche • 4.2k
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623
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SNPcounts error in SNPlocs.Hsapiens.dbSNP.20110815_0.99.3 (i.e., my attempt to update SNPlocs to dbSNP build 134)
regression snplocs biostrings written 8.3 years ago by Tim Triche • 4.2k • updated 8.3 years ago by Vincent J. Carey, Jr. ♦ 6.3k
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1
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800
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1
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Does liftOver work for SNPs mapping to different chr between different builds
snp go cancer snplocs rtracklayer written 8.1 years ago by shirley zhang • 1.0k • updated 8.1 years ago by Michael Lawrence ♦ 11k
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589
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1
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custom SNPlocs / BSgenome package
snp annotation organism homo sapiens bsgenome snplocs written 8.0 years ago by km • 100 • updated 8.0 years ago by Hervé Pagès ♦♦ 14k
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1
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994
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1
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RE : maping SNPs
snp annotation cancer snplocs transcriptdb genomicfeatures genomicranges written 7.8 years ago by SimonNoël • 450 • updated 7.8 years ago by Hervé Pagès ♦♦ 14k
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1
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582
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1
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SNPlocs package for dbSNP 135
cancer snplocs written 7.8 years ago by Hervé Pagès ♦♦ 14k • updated 4.4 years ago by genefan • 0
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2
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764
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2
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Finding coding SNPs with predictCoding
snp variantannotation bsgenome snplocs written 7.8 years ago by Alex Gutteridge • 650 • updated 7.8 years ago by Valerie Obenchain • 6.7k
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1
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674
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1
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Strand information for dbSNP packages
snplocs safe written 7.8 years ago by Alex Gutteridge • 650 • updated 7.8 years ago by Valerie Obenchain • 6.7k
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712
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0
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dbSNP strand information
snplocs safe written 7.8 years ago by Alex Gutteridge • 650
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1
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762
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1
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GGtools: transScores function returning cis eQTL
snp annotation probe snplocs ggtools written 7.2 years ago by Guest User • 12k • updated 7.2 years ago by Vincent J. Carey, Jr. ♦ 6.3k
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836
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predictCoding() return empty Granges
annotation cancer arabidopsis thaliana bsgenome snplocs transcriptdb written 7.2 years ago by sun • 100 • updated 7.2 years ago by Hervé Pagès ♦♦ 14k
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1.1k
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predictCoding() return empty Granges
annotation cancer arabidopsis thaliana bsgenome snplocs transcriptdb written 7.2 years ago by sun • 100 • updated 7.2 years ago by Hervé Pagès ♦♦ 14k
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586
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0
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Problem locating SNP by rsID for SNPlocs.Hsapiens.dbSNP.20120608 package
snp snplocs written 6.9 years ago by Christina Chaivorapol • 40
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1.1k
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Problem locating SNP by rsID for SNPlocs.Hsapiens.dbSNP.20120608 package Bioconductor x
snp snplocs written 6.9 years ago by Christina Chaivorapol • 40 • updated 6.9 years ago by Hervé Pagès ♦♦ 14k
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