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Problem Importing STAR fusion data into chimera
chimera fusion genes star written 5.1 years ago by am26 • 0 • updated 4.8 years ago by richa_r • 0
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Single end STAR Chimeric.out.junction fails to read with chimera::importFusionData
chimera star written 4.9 years ago by wresch • 0 • updated 4.8 years ago by rcaloger • 500
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featureCounts creating fragments and high NoFeatures value
bioconductor featurecounts star differential gene expression written 2.8 years ago by gregory.l.stone • 10 • updated 2.8 years ago by Wei Shi • 3.2k
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lncRNA annotation for featureCouns and STAR
annotation featurecounts star lncrna written 18 months ago by inah • 0 • updated 18 months ago by Wei Shi • 3.2k
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Handling pseudogenes in RNA-seq
counts star rna-seq pseudogenes written 18 months ago by supremerulersuraj • 0 • updated 17 months ago by Levi Waldron ♦ 980
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RNAseq reads mapped to the gene
rnaseq edger featurecounts star written 3.5 years ago by myprogramming2016 • 0
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Differential expression analysis for STAR-aligned RNA-Seq data
rnaseq deseq2 star written 3.3 years ago by sum31278 • 0 • updated 3.3 years ago by Michael Love ♦ 26k
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RNA STAR to DESeq2
deseq2 star count matrix written 2.3 years ago by nikelle.petrillo • 0 • updated 2.3 years ago by James W. MacDonald ♦ 52k
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Why does total unique map not equal to library size?
rnaseq star htseqcounts written 2.3 years ago by Ahdee • 40
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300
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BAM file into R from Illumina
illumina star bam file written 19 months ago by soheilazareie • 0 • updated 19 months ago by ta_awwad • 10
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1
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253
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The optimal minMQS parameter in featureCounts for RNA-Seq quantification
featurecounts star rna-seq minmqs mapping quality score written 10 months ago by Gary • 20 • updated 10 months ago by Gordon Smyth ♦ 39k
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STAR_how many mismatches to allow if the read length is 100 bp in RNA-seq data
star written 4.0 years ago by tg369 • 10
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598
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Gviz off-by-one with STAR BAM
coverage gviz bam star off-by-one written 2.7 years ago by bernt.popp • 0 • updated 2.7 years ago by Martin Morgan ♦♦ 24k
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weired output with featurecount
featurecounts star written 14 months ago by roghaiyeh.safari • 0
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187
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Using STAR and DESeq2 for circRNA analysis
deseq2 star written 9 months ago by csijst • 0 • updated 9 months ago by Michael Love ♦ 26k
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using tximport with STAR transcript-quantification output
deseq2 star tximport written 5 weeks ago by mohamedrefaat.1.1992 • 0 • updated 5 weeks ago by Michael Love ♦ 26k
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