13
votes
6
answers
7.4k
views
8 follow
6
answers
1
vote
1
answer
3.5k
views
1
answer
Differential Analysis for gene expression from TCGA (Level 3)
microarray limma tcga written 3.5 years ago by hudacdif0 • updated 3.5 years ago by Steve Lianoglou12k
5
votes
2
answers
2.6k
views
2
answers
9
votes
3
answers
2.5k
views
5 follow
3
answers
24
votes
3
answers
2.5k
views
9 follow
3
answers
1
vote
3
answers
2.1k
views
3
answers
0
votes
0
answers
2.1k
views
0
answers
0
votes
2
answers
1.8k
views
2
answers
4
votes
1
answer
1.7k
views
1
answer
DESeq2 - design for TCGA level 3 data
deseq2 tcga multiple factor design experimental design written 3.4 years ago by anand m t40 • updated 3.4 years ago by Michael Love19k
0
votes
0
answers
1.6k
views
0
answers
1
vote
2
answers
1.4k
views
2
answers
R Text progress bar error
tcga written 2.8 years ago by devyani660
1
vote
0
answers
1.2k
views
0
answers
0
votes
1
answer
1.2k
views
1
answer
Extract gene expression values from GDCprepare object
tcga tcgabiolinks tcgadownload gdcprepare gdc written 20 months ago by enigmargs0 • updated 19 months ago by tiagochst150
2
votes
1
answer
927
views
1
answer
0
votes
0
answers
924
views
0
answers
0
votes
1
answer
772
views
1
answer
0
votes
1
answer
757
views
1
answer
Mapping of two different regions to one gene symbol
tcga cnv written 3.4 years ago by NS30 • updated 3.4 years ago by Marc Carlson7.2k
0
votes
0
answers
721
views
0
answers
TCGABiolinks not available for R3.3.0
R tcga tcgabiolinks written 2.3 years ago by j.ritchie0 • updated 2.3 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
680
views
1
answer
mutational signatures problems
annotation bsgenome somaticsignatures readvcf tcga written 2.6 years ago by jolligoodfellow0 • updated 2.6 years ago by Julian Gehring1.3k
1
vote
1
answer
641
views
1
answer
DESeq2/edgeR DEG analysis data input from TCGA and correation analysis
edger tcga written 12 months ago by JackieMe0 • updated 12 months ago by Aaron Lun21k
1
vote
1
answer
635
views
1
answer
1
vote
1
answer
633
views
1
answer
Error on creation of DESEq2 object
deseq2 tcga written 23 months ago by jarod_v6@libero.it40 • updated 23 months ago by Michael Love19k
1
vote
0
answers
623
views
0
answers
0
votes
1
answer
595
views
1
answer
Differential gene expression analysis for GSE62944
cancer limma R bioconductor tcga written 2.6 years ago by hamda.binte.ajmal0 • updated 2.6 years ago by Valerie Obenchain ♦♦ 6.6k
2
votes
1
answer
564
views
1
answer
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