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update TCGAbiolinks to version 3.6 and GDCquery doesn't work
software error tcgabiolinks written 2.1 years ago by sechenmo • 0 • updated 2.1 years ago by eshelden • 20
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2
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TCGABiolinks::GDCquery() suddenly sending back unknown error
error software error tcgabiolinks gdcquery written 2.1 years ago by jrlarsen • 10 • updated 2.1 years ago by eshelden • 20
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TCGAbiolinks Download ERROR
error download tcga tcgabiolinks written 2.1 years ago by Talip Zengin • 10 • updated 2.1 years ago by eshelden • 20
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TCGA-biolink: GRCH38 RNA-seq, normalized counts matrix, Converting ensemble gene name into common gene name
annotation grch38 tcgabiolinks written 2.2 years ago by salvocomplicazioni1 • 0 • updated 2.1 years ago by tiagochst • 150
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maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicatedVariants, : missing required fields from MAF: Chromosome
software error tcgabiolinks maftools written 2.2 years ago by Ramiro Magno • 100 • updated 2.1 years ago by tiagochst • 150
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TCGAbiolinks GDCquery Error: Parsing problems
tcgabiolinks written 2.1 years ago by Ramiro Magno • 100 • updated 2.1 years ago by maysa_taheir • 50
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package or namespace load failed for TCGAbiolinks
tcgabiolinks written 2.2 years ago by jason.yijialin • 0 • updated 2.2 years ago by wenhuo hu • 200
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Error downloading the package
download tcga tcgabiolinks written 2.2 years ago by sup230 • 30 • updated 2.2 years ago by James W. MacDonald ♦ 52k
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Unable to install TCGAbiolinks
tcgabiolinks written 2.2 years ago by rfes • 0 • updated 2.2 years ago by shepherl ♦♦ 1.7k
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Error in mRNAselected_values_ordered[1:(lastelementTOP - 1)]
tcga tcgabiolinks survival analysis written 2.2 years ago by lqfuture • 0
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388
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TCGAbiolinks XML error
tcgabiolinks written 2.4 years ago by Markus List • 20 • updated 2.2 years ago by lqfuture • 0
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688
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2
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Problem with TCGAbiolinks Enrichment analysis
tcgabiolinks written 2.5 years ago by david.tieri • 10 • updated 2.5 years ago by conico • 0
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737
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How to get treatment information with TCGAbiolinks?
R tcgabiolinks gdcprepare treatment_type data extraction written 2.5 years ago by newbie • 0 • updated 2.5 years ago by Dario Strbenac • 1.5k
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Error using TCGAbiolinks "Error in fix.by(by.y, y) : 'by' must specify a uniquely valid column"
error tcga tcgabiolinks written 2.5 years ago by f.geist • 10
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TCGAbiolinks : TCGAdownload Error in curl
error R tcgabiolinks tcgadownload written 2.5 years ago by juniuskcc • 0
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Data download via TCGAbiolinks
tcgabiolinks written 3.9 years ago by maedakus • 10 • updated 2.6 years ago by ugandhar.ch1 • 0
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TCGA controlled data
R tcgabiolinks gdcprepare written 2.6 years ago by ugandhar.ch1 • 0
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TCGAbiolinks Installation Issues
tcgabiolinks written 2.6 years ago by natalie_stephenson • 0
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TCGAbiolinks Error in gene.location$ensembl_gene_id : $ operator is invalid for atomic vectors
tcgabiolinks written 2.7 years ago by tangming2005 • 150 • updated 2.7 years ago by Mike Smith • 4.0k
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Extract gene expression values from GDCprepare object
tcga tcgabiolinks tcgadownload gdcprepare gdc written 2.9 years ago by enigmargs • 0 • updated 2.7 years ago by Tiago Chedraoui Silva • 240
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Problem with using GDC_queryMaf()
maf tcgabiolinks mutations written 2.8 years ago by d r • 150 • updated 2.7 years ago by Tiago Chedraoui Silva • 240
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TCGAbiolinks maf files RAS mutation rate not matching maf files from firehose
tcgabiolinks written 2.8 years ago by tangming2005 • 150
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TCGAbiolinks query error
tcgabiolinks written 2.8 years ago by gaiusjaugustus • 0
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396
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Meaning of subtype_methylation.Clusters , subtype_miRNA.Clusters, subtype_CN.Clusters
tcgabiolinks written 2.9 years ago by vera • 0 • updated 2.9 years ago by Tiago Chedraoui Silva • 240
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Error in 'rownames' while using TCGAanalyze_Normalization in TCGA_biolinks
error tcgabiolinks written 2.9 years ago by salvl • 10
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