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Subsetting a data frame generated by topTable() {limma}
microarray limma toptable written 3 months ago by Alexander Azarian • 20 • updated 3 months ago by Gordon Smyth ♦ 39k
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Why my limma DEG result in top Table all without significant meaning,showing logFC <1.5 or logFC>-1.5 ?
limma toptable logfc deg written 15 months ago by Biomed • 0 • updated 15 months ago by Gordon Smyth ♦ 39k
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Help to understand my contrast.matrix and to interpret my topTable results
toptable differential gene expression makecontrasts contrast matrix written 2.2 years ago by stinehedensted • 0
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limma: The topTable function implementation when outputin the differential expression results from RNA-seq dataset?
limma edger toptable voom output written 2.4 years ago by heikki.sarin • 0 • updated 2.4 years ago by Aaron Lun • 25k
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Limma: how to get same output as topTable but for all the genes ?
limma toptable written 11.1 years ago by Daren Tan • 160 • updated 2.4 years ago by Gordon Smyth ♦ 39k
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differentially expressed genes without contrasts
limma toptable makecontrasts contrast matrix written 2.4 years ago by hoe • 0 • updated 2.4 years ago by Ryan C. Thompson ♦ 7.4k
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Explanation of an ANOVA approach of multiple coefficients in limma with topTable in a microarray analysis
microarray limma toptable anova written 3.2 years ago by Konstantinos Yeles • 20 • updated 3.2 years ago by Gordon Smyth ♦ 39k
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TopTable Problem : Unique Adj.P.Val which is near 1
limma toptable written 3.5 years ago by giroudpaul • 40
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Interpretation of confidence interval values for logFC returned from topTable function in limma with microarray dataset
microarray limma toptable confidence interval effect size written 3.8 years ago by Konstantinos Yeles • 20 • updated 3.8 years ago by Gordon Smyth ♦ 39k
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Error while calling function topTable() from limma R package in microarray data analysis
microarray limma toptable statistical inference a4core written 3.9 years ago by svlachavas • 740 • updated 3.9 years ago by Aaron Lun • 25k
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Meta-Analysis after running limma on a normalized dataset
limma toptable meta-analysis written 4.4 years ago by Vani • 20 • updated 4.4 years ago by Aaron Lun • 25k
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Standard error and effect size from Limma
limma toptable effect size standard error written 4.4 years ago by Vani • 20 • updated 4.4 years ago by Gordon Smyth ♦ 39k
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report genes in intersection of Venn diagram with topTable?
rnaseq limma edger toptable venn diagram written 4.5 years ago by MBWatson • 0 • updated 4.5 years ago by Gordon Smyth ♦ 39k
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what causes the difference in the topTable results by the two analyses using limma?
limma toptable written 5.2 years ago by Rao,Xiayu • 540 • updated 5.2 years ago by Aaron Lun • 25k
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