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2
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1
answer
170
views
1
answer
Why my limma DEG result in top Table all without significant meaning,showing logFC <1.5 or logFC>-1.5 ?
limma toptable logfc deg written 3 months ago by Biomed • 0 • updated 3 months ago by Gordon Smyth ♦ 35k
3
votes
2
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386
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5 follow
2
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Help to understand my contrast.matrix and to interpret my topTable results
toptable differential gene expression makecontrasts contrast matrix written 14 months ago by stinehedensted • 0
0
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1
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641
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1
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limma: The topTable function implementation when outputin the differential expression results from RNA-seq dataset?
limma edger toptable voom output written 16 months ago by heikki.sarin • 0 • updated 16 months ago by Aaron Lun • 21k
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3
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3
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Limma: how to get same output as topTable but for all the genes ?
limma toptable written 10.1 years ago by Daren Tan • 160 • updated 16 months ago by Gordon Smyth ♦ 35k
1
vote
1
answer
254
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1
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differentially expressed genes without contrasts
limma toptable makecontrasts contrast matrix written 17 months ago by hoe • 0 • updated 17 months ago by Ryan C. Thompson ♦ 7.1k
3
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1
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552
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1
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Explanation of an ANOVA approach of multiple coefficients in limma with topTable in a microarray analysis
microarray limma toptable anova written 2.2 years ago by yeles.konstantinos • 10 • updated 2.2 years ago by Gordon Smyth ♦ 35k
14
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1
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818
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1
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TopTable Problem : Unique Adj.P.Val which is near 1
limma toptable written 2.5 years ago by giroudpaul • 30
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2
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1.6k
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2
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Interpretation of confidence interval values for logFC returned from topTable function in limma with microarray dataset
microarray limma toptable confidence interval effect size written 2.8 years ago by yeles.konstantinos • 10 • updated 2.8 years ago by Gordon Smyth ♦ 35k
2
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1
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647
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1
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Error while calling function topTable() from limma R package in microarray data analysis
microarray limma toptable statistical inference a4core written 2.9 years ago by svlachavas • 620 • updated 2.9 years ago by Aaron Lun • 21k
2
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1
answer
990
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1
answer
Meta-Analysis after running limma on a normalized dataset
limma toptable meta-analysis written 3.4 years ago by Vani • 20 • updated 3.4 years ago by Aaron Lun • 21k
10
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2
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2.3k
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6 follow
2
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Standard error and effect size from Limma
limma toptable effect size standard error written 3.4 years ago by Vani • 20 • updated 3.4 years ago by Gordon Smyth ♦ 35k
2
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2
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2.1k
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2
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report genes in intersection of Venn diagram with topTable?
rnaseq limma edger toptable venn diagram written 3.5 years ago by MBWatson • 0 • updated 3.5 years ago by Gordon Smyth ♦ 35k
6
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818
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what causes the difference in the topTable results by the two analyses using limma?
limma toptable written 4.2 years ago by Rao,Xiayu • 530 • updated 4.2 years ago by Aaron Lun • 21k
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