Showing: txdbreset
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the coordinates of exons of RefSeq or ENSEMBL genes
txdb exons genome written 4 months ago by Bogdan580 • updated 4 months ago by Martin Morgan ♦♦ 24k
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179
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Warning in makeTxDbFromGFF
txdb written 5 months ago by weir0 • updated 5 months ago by Hervé Pagès ♦♦ 14k
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3
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How to use EnsDb in annotatePeak from package "ChIPseeker"
chipseeker granges txdb annotatepeak ensdb written 10 months ago by foehn60 • updated 9 months ago by Johannes Rainer1.5k
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TxDb basic question
txdb txdb.mmulatta.ucsc.rhemac8.refgene written 17 months ago by Brian Smith120 • updated 17 months ago by daniel.vantwisk50
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Merging each element of a list of Genomic range
granges R txdb cds orf written 18 months ago by q.thomas0 • updated 18 months ago by James W. MacDonald52k
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476
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Extract genomic features from a TxDb-like object
genomicfeatures getpromoterseq promoter txdb written 21 months ago by rbenel0 • updated 21 months ago by Hervé Pagès ♦♦ 14k
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Cannot extract TxFeatures for a defined GRanges object
genomicfeatures genomicranges txdb written 2.1 years ago by oolongoni10 • updated 2.1 years ago by Hervé Pagès ♦♦ 14k
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560
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3
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3
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513
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R session crash with SGSeq::convertToTxFeatures
sgseq txdb crash maketxdbfrombiomart txfeatures written 2.2 years ago by oolongoni10 • updated 2.2 years ago by Leonard Goldstein110
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makeTxDbFromGFF Error due to incompatible seqnames
genomicfeatures gtf txdb summarizedexperiment written 2.4 years ago by filipeje0 • updated 2.4 years ago by Michael Love26k
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585
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5
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Possible error in TxDb.Mmusculus.UCSC.mm10.ensGene_3.4.0?
genomicfeatures txdb written 2.8 years ago by Chao-Jen Wong30 • updated 2.8 years ago by James W. MacDonald52k
2
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516
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0
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477
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Error in TxDb mm10 coordinates?
txdb txdb.mmusculus.ucsc.mm10.knowngene written 3.0 years ago by Mark10 • updated 3.0 years ago by James W. MacDonald52k
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543
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