Search
4
votes
1
answer
778
views
1
answer
Why does Homo.sapiens import TxDb.Hsapiens.UCSC.hg19.knownGene instead of TxDb.Hsapiens.UCSC.hg38.knownGene?
annotation homo.sapiens txdb written 2.5 years ago by enricoferrero • 570 • updated 2.5 years ago by Valerie Obenchain ♦♦ 6.6k
0
votes
1
answer
535
views
1
answer
How to find index position of desired feature_by in TxDb granges?
genomicfeatures granges txdb written 2.6 years ago by vinod.acear • 30 • updated 2.6 years ago by Martin Morgan ♦♦ 22k
2
votes
1
answer
494
views
1
answer
How to rename seqlevels style (I, II, III, ...,XVI, Mito to 1,2,3,...16, 17.) in txdb granges?
granges grangeslist txdb renameseqlevels mapseqlevels written 2.6 years ago by vinod.acear • 30
1
vote
1
answer
614
views
1
answer
problem creating txdb object and bsgenome for solanum pennellii
bsgenome promoter txdb written 2.7 years ago by sekawaiwai2006 • 20 • updated 2.7 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
634
views
1
answer
extracting promoter region error for A.thaliana
txdb promoter region written 2.7 years ago by sekawaiwai2006 • 20 • updated 2.7 years ago by Martin Morgan ♦♦ 22k
4
votes
1
answer
993
views
1
answer
How to get Genomic feature in txdb format from biomart for sacCer2 (EF4) assembly?
biomart genomicfeatures txdb maketxdbfrombiomart written 3.0 years ago by vinod.acear • 30 • updated 3.0 years ago by James W. MacDonald ♦ 48k
0
votes
3
answers
475
views
3
answers
threeUTRsByTranscript appears to not work after invoking setter seqlevelsStyle
seqlevels txdb threeutrsbytranscript seqlevelsstyle written 3.1 years ago by Robert K. Bradley • 40
0
votes
2
answers
592
views
2
answers
possible conflict between renameSeqLevels (TxDb) and isActiveSeq (TxDb)
genomicfeatures bug txdb written 3.1 years ago by Robert K. Bradley • 40
0
votes
2
answers
411
views
2
answers
renamed seqlevels (TxDb) don't persist through a save-load cycle
genomicfeatures txdb written 3.1 years ago by Robert K. Bradley • 40
2
votes
2
answers
928
views
2
answers
Working with Arabidopsis Databases
bsgenome biomart getpromoterseq txdb written 3.2 years ago by oliwindram • 10
0
votes
1
answer
1.1k
views
1
answer
makeTxDbpackage after makeTxDbfromGFF --> Error in spc[[2]] : subscript out of bounds
gtf txdb maketxdbfromgff written 3.3 years ago by yacine.badis • 0 • updated 3.3 years ago by Hervé Pagès ♦♦ 13k
7
votes
6
answers
795
views
6
answers
Setting package name in makeTxDbPackage
genomicfeatures txdb written 3.4 years ago by Diego Diez • 730 • updated 3.4 years ago by Marc Carlson • 7.2k
2
votes
1
answer
663
views
1
answer
Setting genome information on a TxDb object
genomicfeatures txdb written 3.4 years ago by Diego Diez • 730 • updated 3.4 years ago by Hervé Pagès ♦♦ 13k
3
votes
1
answer
1.9k
views
1
answer
Installation of TxDb.Hsapiens.UCSC.hg19.knownGene fails.
biocinstaller installation txdb written 3.7 years ago by Laurent Gatto ♦ 1.0k • updated 3.7 years ago by Marc Carlson • 7.2k
<prev • 39 results • page 2 of 2 • next >
Recent...
Replies
Votes
Awards • All »
Locations • All »
  • United States, 27 minutes ago
  • University of Florida, 1 hour ago
  • Denali, 1 hour ago
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 241 users visited in the last hour