7
votes
6
answers
862
views
6
answers
Setting package name in makeTxDbPackage
genomicfeatures txdb written 3.6 years ago by Diego Diez730 • updated 3.6 years ago by Marc Carlson7.2k
3
votes
1
answer
2.0k
views
1
answer
Installation of TxDb.Hsapiens.UCSC.hg19.knownGene fails.
biocinstaller installation txdb written 3.9 years ago by Laurent Gatto1.1k • updated 3.9 years ago by Marc Carlson7.2k
0
votes
2
answers
622
views
2
answers
0
votes
1
answer
467
views
1
answer
5
votes
1
answer
650
views
1
answer
Possible error in TxDb.Mmusculus.UCSC.mm10.ensGene_3.4.0?
genomicfeatures txdb written 21 months ago by Chao-Jen Wong30 • updated 21 months ago by James W. MacDonald48k
3
votes
3
answers
309
views
3
answers
2
votes
2
answers
658
views
2
answers
0
votes
1
answer
134
views
1
answer
TxDb basic question
txdb txdb.mmulatta.ucsc.rhemac8.refgene written 5 months ago by Brian Smith120 • updated 5 months ago by daniel.vantwisk30
0
votes
1
answer
152
views
1
answer
0
votes
0
answers
160
views
0
answers
2
votes
1
answer
701
views
1
answer
Setting genome information on a TxDb object
genomicfeatures txdb written 3.6 years ago by Diego Diez730 • updated 3.6 years ago by Hervé Pagès ♦♦ 13k
0
votes
1
answer
1.1k
views
1
answer
2
votes
2
answers
1.0k
views
2
answers
0
votes
2
answers
441
views
2
answers
0
votes
3
answers
509
views
3
answers
4
votes
1
answer
1.0k
views
1
answer
0
votes
1
answer
679
views
1
answer
extracting promoter region error for A.thaliana
txdb promoter region written 2.9 years ago by sekawaiwai200620 • updated 2.9 years ago by Martin Morgan ♦♦ 22k
1
vote
1
answer
659
views
1
answer
problem creating txdb object and bsgenome for solanum pennellii
bsgenome promoter txdb written 2.9 years ago by sekawaiwai200620 • updated 2.9 years ago by Martin Morgan ♦♦ 22k
2
votes
1
answer
517
views
1
answer
0
votes
1
answer
566
views
1
answer
How to find index position of desired feature_by in TxDb granges?
genomicfeatures granges txdb written 2.8 years ago by vinod.acear30 • updated 2.8 years ago by Martin Morgan ♦♦ 22k
4
votes
1
answer
837
views
1
answer
0
votes
0
answers
493
views
0
answers
extractUpstreamSeqs with custom genome, no gene_id shown
featureextraction genomicfeatures genomicranges txdb written 2.7 years ago by wd10 • updated 2.7 years ago by Martin Morgan ♦♦ 22k
7
votes
2
answers
1.3k
views
2
answers
0
votes
2
answers
421
views
2
answers
how to get transcript annotation (unique)
txdb written 2.6 years ago by K50
4
votes
1
answer
449
views
1
answer
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