7
votes
6
answers
675
views
6
answers
Setting package name in makeTxDbPackage
genomicfeatures txdb written 2.8 years ago by Diego Diez720 • updated 2.8 years ago by Marc Carlson7.2k
3
votes
1
answer
1.4k
views
1
answer
Installation of TxDb.Hsapiens.UCSC.hg19.knownGene fails.
biocinstaller installation txdb written 3.1 years ago by Laurent Gatto900 • updated 3.1 years ago by Marc Carlson7.2k
0
votes
2
answers
469
views
2
answers
0
votes
1
answer
308
views
1
answer
5
votes
1
answer
392
views
1
answer
Possible error in TxDb.Mmusculus.UCSC.mm10.ensGene_3.4.0?
genomicfeatures txdb written 11 months ago by Chao-Jen Wong30 • updated 11 months ago by James W. MacDonald45k
3
votes
3
answers
160
views
3
answers
2
votes
2
answers
241
views
2
answers
2
votes
1
answer
559
views
1
answer
Setting genome information on a TxDb object
genomicfeatures txdb written 2.8 years ago by Diego Diez720 • updated 2.8 years ago by Hervé Pagès ♦♦ 13k
0
votes
1
answer
898
views
1
answer
2
votes
2
answers
691
views
2
answers
0
votes
2
answers
361
views
2
answers
0
votes
3
answers
409
views
3
answers
4
votes
1
answer
791
views
1
answer
0
votes
1
answer
500
views
1
answer
extracting promoter region error for A.thaliana
txdb promoter region written 2.1 years ago by sekawaiwai200620 • updated 2.1 years ago by Martin Morgan ♦♦ 21k
1
vote
1
answer
512
views
1
answer
problem creating txdb object and bsgenome for solanum pennellii
bsgenome promoter txdb written 2.1 years ago by sekawaiwai200620 • updated 2.1 years ago by Martin Morgan ♦♦ 21k
2
votes
1
answer
395
views
1
answer
0
votes
1
answer
410
views
1
answer
How to find index position of desired feature_by in TxDb granges?
genomicfeatures granges txdb written 24 months ago by vinod.acear20 • updated 24 months ago by Martin Morgan ♦♦ 21k
4
votes
1
answer
553
views
1
answer
0
votes
0
answers
359
views
0
answers
extractUpstreamSeqs with custom genome, no gene_id shown
featureextraction genomicfeatures genomicranges txdb written 22 months ago by wd10 • updated 22 months ago by Martin Morgan ♦♦ 21k
7
votes
2
answers
769
views
2
answers
0
votes
2
answers
287
views
2
answers
how to get transcript annotation (unique)
txdb written 22 months ago by K40
4
votes
1
answer
331
views
1
answer
1
vote
1
answer
1.2k
views
1
answer
3
votes
1
answer
294
views
1
answer
0
votes
1
answer
217
views
1
answer
Error in TxDb mm10 coordinates?
txdb txdb.mmusculus.ucsc.mm10.knowngene written 15 months ago by Mark10 • updated 15 months ago by James W. MacDonald45k
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