7
votes
6
answers
786
views
6
answers
Setting package name in makeTxDbPackage
genomicfeatures txdb written 3.4 years ago by Diego Diez730 • updated 3.3 years ago by Marc Carlson7.2k
3
votes
1
answer
1.8k
views
1
answer
Installation of TxDb.Hsapiens.UCSC.hg19.knownGene fails.
biocinstaller installation txdb written 3.7 years ago by Laurent Gatto1.0k • updated 3.7 years ago by Marc Carlson7.2k
0
votes
2
answers
578
views
2
answers
0
votes
1
answer
416
views
1
answer
5
votes
1
answer
553
views
1
answer
Possible error in TxDb.Mmusculus.UCSC.mm10.ensGene_3.4.0?
genomicfeatures txdb written 18 months ago by Chao-Jen Wong30 • updated 18 months ago by James W. MacDonald47k
3
votes
3
answers
256
views
3
answers
2
votes
2
answers
535
views
2
answers
0
votes
1
answer
90
views
1
answer
TxDb basic question
txdb txdb.mmulatta.ucsc.rhemac8.refgene written 12 weeks ago by Brian Smith120 • updated 11 weeks ago by daniel.vantwisk30
0
votes
1
answer
92
views
1
answer
2
votes
1
answer
654
views
1
answer
Setting genome information on a TxDb object
genomicfeatures txdb written 3.4 years ago by Diego Diez730 • updated 3.3 years ago by Hervé Pagès ♦♦ 13k
0
votes
1
answer
1.1k
views
1
answer
2
votes
2
answers
897
views
2
answers
0
votes
2
answers
402
views
2
answers
0
votes
3
answers
470
views
3
answers
4
votes
1
answer
967
views
1
answer
0
votes
1
answer
616
views
1
answer
extracting promoter region error for A.thaliana
txdb promoter region written 2.6 years ago by sekawaiwai200620 • updated 2.6 years ago by Martin Morgan ♦♦ 22k
1
vote
1
answer
605
views
1
answer
problem creating txdb object and bsgenome for solanum pennellii
bsgenome promoter txdb written 2.6 years ago by sekawaiwai200620 • updated 2.6 years ago by Martin Morgan ♦♦ 22k
2
votes
1
answer
485
views
1
answer
0
votes
1
answer
529
views
1
answer
How to find index position of desired feature_by in TxDb granges?
genomicfeatures granges txdb written 2.5 years ago by vinod.acear20 • updated 2.5 years ago by Martin Morgan ♦♦ 22k
4
votes
1
answer
758
views
1
answer
0
votes
0
answers
464
views
0
answers
extractUpstreamSeqs with custom genome, no gene_id shown
featureextraction genomicfeatures genomicranges txdb written 2.4 years ago by wd10 • updated 2.4 years ago by Martin Morgan ♦♦ 22k
7
votes
2
answers
1.1k
views
2
answers
0
votes
2
answers
375
views
2
answers
how to get transcript annotation (unique)
txdb written 2.4 years ago by K50
4
votes
1
answer
405
views
1
answer
1
vote
1
answer
1.3k
views
1
answer
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