7
votes
6
answers
735
views
6
answers
Setting package name in makeTxDbPackage
genomicfeatures txdb written 3.1 years ago by Diego Diez730 • updated 3.1 years ago by Marc Carlson7.2k
3
votes
1
answer
1.6k
views
1
answer
Installation of TxDb.Hsapiens.UCSC.hg19.knownGene fails.
biocinstaller installation txdb written 3.4 years ago by Laurent Gatto980 • updated 3.4 years ago by Marc Carlson7.2k
0
votes
2
answers
538
views
2
answers
0
votes
1
answer
353
views
1
answer
5
votes
1
answer
486
views
1
answer
Possible error in TxDb.Mmusculus.UCSC.mm10.ensGene_3.4.0?
genomicfeatures txdb written 15 months ago by Chao-Jen Wong30 • updated 15 months ago by James W. MacDonald46k
3
votes
3
answers
213
views
3
answers
2
votes
2
answers
412
views
2
answers
2
votes
1
answer
610
views
1
answer
Setting genome information on a TxDb object
genomicfeatures txdb written 3.1 years ago by Diego Diez730 • updated 3.1 years ago by Hervé Pagès ♦♦ 13k
0
votes
1
answer
992
views
1
answer
2
votes
2
answers
824
views
2
answers
0
votes
2
answers
383
views
2
answers
0
votes
3
answers
445
views
3
answers
4
votes
1
answer
921
views
1
answer
0
votes
1
answer
578
views
1
answer
extracting promoter region error for A.thaliana
txdb promoter region written 2.4 years ago by sekawaiwai200620 • updated 2.4 years ago by Martin Morgan ♦♦ 21k
1
vote
1
answer
566
views
1
answer
problem creating txdb object and bsgenome for solanum pennellii
bsgenome promoter txdb written 2.4 years ago by sekawaiwai200620 • updated 2.4 years ago by Martin Morgan ♦♦ 21k
2
votes
1
answer
460
views
1
answer
0
votes
1
answer
489
views
1
answer
How to find index position of desired feature_by in TxDb granges?
genomicfeatures granges txdb written 2.3 years ago by vinod.acear20 • updated 2.3 years ago by Martin Morgan ♦♦ 21k
4
votes
1
answer
694
views
1
answer
0
votes
0
answers
429
views
0
answers
extractUpstreamSeqs with custom genome, no gene_id shown
featureextraction genomicfeatures genomicranges txdb written 2.2 years ago by wd10 • updated 2.2 years ago by Martin Morgan ♦♦ 21k
7
votes
2
answers
965
views
2
answers
0
votes
2
answers
338
views
2
answers
how to get transcript annotation (unique)
txdb written 2.2 years ago by K50
4
votes
1
answer
374
views
1
answer
1
vote
1
answer
1.2k
views
1
answer
3
votes
1
answer
322
views
1
answer
0
votes
1
answer
263
views
1
answer
Error in TxDb mm10 coordinates?
txdb txdb.mmusculus.ucsc.mm10.knowngene written 19 months ago by Mark10 • updated 19 months ago by James W. MacDonald46k
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