3
votes
1
answer
1.2k
views
1
answer
Installation of TxDb.Hsapiens.UCSC.hg19.knownGene fails.
biocinstaller installation txdb written 2.8 years ago by Laurent Gatto840 • updated 2.8 years ago by Marc Carlson7.2k
2
votes
1
answer
522
views
1
answer
Setting genome information on a TxDb object
genomicfeatures txdb written 2.5 years ago by Diego Diez700 • updated 2.5 years ago by Hervé Pagès ♦♦ 13k
7
votes
6
answers
602
views
6
answers
Setting package name in makeTxDbPackage
genomicfeatures txdb written 2.5 years ago by Diego Diez700 • updated 2.5 years ago by Marc Carlson7.2k
0
votes
1
answer
818
views
1
answer
2
votes
2
answers
581
views
2
answers
0
votes
2
answers
416
views
2
answers
0
votes
2
answers
344
views
2
answers
0
votes
3
answers
374
views
3
answers
4
votes
1
answer
698
views
1
answer
0
votes
1
answer
440
views
1
answer
extracting promoter region error for A.thaliana
txdb promoter region written 21 months ago by sekawaiwai200620 • updated 21 months ago by Martin Morgan ♦♦ 20k
1
vote
1
answer
460
views
1
answer
problem creating txdb object and bsgenome for solanum pennellii
bsgenome promoter txdb written 21 months ago by sekawaiwai200620 • updated 21 months ago by Martin Morgan ♦♦ 20k
2
votes
1
answer
346
views
1
answer
0
votes
1
answer
364
views
1
answer
How to find index position of desired feature_by in TxDb granges?
genomicfeatures granges txdb written 20 months ago by vinod.acear20 • updated 20 months ago by Martin Morgan ♦♦ 20k
4
votes
1
answer
470
views
1
answer
0
votes
0
answers
310
views
0
answers
extractUpstreamSeqs with custom genome, no gene_id shown
featureextraction genomicfeatures genomicranges txdb written 19 months ago by wd10 • updated 19 months ago by Martin Morgan ♦♦ 20k
7
votes
2
answers
657
views
2
answers
0
votes
2
answers
255
views
2
answers
how to get transcript annotation (unique)
txdb written 19 months ago by K40
0
votes
1
answer
265
views
1
answer
4
votes
1
answer
287
views
1
answer
1
vote
1
answer
841
views
1
answer
3
votes
1
answer
266
views
1
answer
0
votes
1
answer
182
views
1
answer
Error in TxDb mm10 coordinates?
txdb txdb.mmusculus.ucsc.mm10.knowngene written 11 months ago by Mark10 • updated 11 months ago by James W. MacDonald45k
2
votes
1
answer
232
views
1
answer
5
votes
1
answer
307
views
1
answer
Possible error in TxDb.Mmusculus.UCSC.mm10.ensGene_3.4.0?
genomicfeatures txdb written 8 months ago by Chao-Jen Wong30 • updated 8 months ago by James W. MacDonald45k
0
votes
1
answer
188
views
1
answer
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