3
votes
1
answer
1.3k
views
1
answer
Installation of TxDb.Hsapiens.UCSC.hg19.knownGene fails.
biocinstaller installation txdb written 3.0 years ago by Laurent Gatto880 • updated 3.0 years ago by Marc Carlson7.2k
2
votes
1
answer
546
views
1
answer
Setting genome information on a TxDb object
genomicfeatures txdb written 2.7 years ago by Diego Diez710 • updated 2.7 years ago by Hervé Pagès ♦♦ 13k
7
votes
6
answers
649
views
6
answers
Setting package name in makeTxDbPackage
genomicfeatures txdb written 2.7 years ago by Diego Diez710 • updated 2.7 years ago by Marc Carlson7.2k
0
votes
1
answer
865
views
1
answer
2
votes
2
answers
644
views
2
answers
0
votes
2
answers
447
views
2
answers
0
votes
2
answers
357
views
2
answers
0
votes
3
answers
402
views
3
answers
4
votes
1
answer
752
views
1
answer
0
votes
1
answer
478
views
1
answer
extracting promoter region error for A.thaliana
txdb promoter region written 23 months ago by sekawaiwai200620 • updated 23 months ago by Martin Morgan ♦♦ 21k
1
vote
1
answer
496
views
1
answer
problem creating txdb object and bsgenome for solanum pennellii
bsgenome promoter txdb written 23 months ago by sekawaiwai200620 • updated 23 months ago by Martin Morgan ♦♦ 21k
2
votes
1
answer
372
views
1
answer
0
votes
1
answer
394
views
1
answer
How to find index position of desired feature_by in TxDb granges?
genomicfeatures granges txdb written 22 months ago by vinod.acear20 • updated 22 months ago by Martin Morgan ♦♦ 21k
4
votes
1
answer
524
views
1
answer
0
votes
0
answers
341
views
0
answers
extractUpstreamSeqs with custom genome, no gene_id shown
featureextraction genomicfeatures genomicranges txdb written 21 months ago by wd10 • updated 21 months ago by Martin Morgan ♦♦ 21k
7
votes
2
answers
718
views
2
answers
0
votes
2
answers
276
views
2
answers
how to get transcript annotation (unique)
txdb written 21 months ago by K40
0
votes
1
answer
296
views
1
answer
4
votes
1
answer
318
views
1
answer
1
vote
1
answer
1.2k
views
1
answer
3
votes
1
answer
287
views
1
answer
0
votes
1
answer
201
views
1
answer
Error in TxDb mm10 coordinates?
txdb txdb.mmusculus.ucsc.mm10.knowngene written 13 months ago by Mark10 • updated 13 months ago by James W. MacDonald45k
2
votes
1
answer
257
views
1
answer
5
votes
1
answer
360
views
1
answer
Possible error in TxDb.Mmusculus.UCSC.mm10.ensGene_3.4.0?
genomicfeatures txdb written 10 months ago by Chao-Jen Wong30 • updated 10 months ago by James W. MacDonald45k
0
votes
1
answer
217
views
1
answer
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