Showing: txdbreset
3
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1
answer
2.4k
views
1
answer
Installation of TxDb.Hsapiens.UCSC.hg19.knownGene fails.
biocinstaller installation txdb written 4.9 years ago by Laurent Gatto1.2k • updated 4.9 years ago by Marc Carlson7.2k
2
votes
1
answer
847
views
1
answer
Setting genome information on a TxDb object
genomicfeatures txdb written 4.6 years ago by Diego Diez750 • updated 4.6 years ago by Hervé Pagès ♦♦ 14k
7
votes
6
answers
1.1k
views
6
answers
Setting package name in makeTxDbPackage
genomicfeatures txdb written 4.6 years ago by Diego Diez750 • updated 4.6 years ago by Marc Carlson7.2k
0
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1
answer
1.3k
views
1
answer
2
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2
answers
1.3k
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2
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0
votes
2
answers
762
views
2
answers
0
votes
2
answers
534
views
2
answers
0
votes
3
answers
664
views
3
answers
4
votes
1
answer
1.3k
views
1
answer
0
votes
1
answer
848
views
1
answer
extracting promoter region error for A.thaliana
txdb promoter region written 3.9 years ago by sekawaiwai200620 • updated 3.9 years ago by Martin Morgan ♦♦ 24k
1
vote
1
answer
802
views
1
answer
problem creating txdb object and bsgenome for solanum pennellii
bsgenome promoter txdb written 3.8 years ago by sekawaiwai200620 • updated 3.8 years ago by Martin Morgan ♦♦ 24k
2
votes
1
answer
647
views
1
answer
0
votes
1
answer
715
views
1
answer
How to find index position of desired feature_by in TxDb granges?
genomicfeatures granges txdb written 3.8 years ago by vinod.acear40 • updated 3.8 years ago by Martin Morgan ♦♦ 24k
4
votes
1
answer
1.0k
views
1
answer
0
votes
0
answers
604
views
0
answers
extractUpstreamSeqs with custom genome, no gene_id shown
featureextraction genomicfeatures genomicranges txdb written 3.6 years ago by wd30 • updated 3.6 years ago by Martin Morgan ♦♦ 24k
7
votes
2
answers
1.6k
views
2
answers
0
votes
2
answers
586
views
2
answers
how to get transcript annotation (unique)
txdb written 3.6 years ago by K50
0
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1
answer
620
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1
answer
4
votes
1
answer
564
views
1
answer
1
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1
answer
1.5k
views
1
answer
3
votes
1
answer
541
views
1
answer
0
votes
1
answer
474
views
1
answer
Error in TxDb mm10 coordinates?
txdb txdb.mmusculus.ucsc.mm10.knowngene written 3.0 years ago by Mark10 • updated 3.0 years ago by James W. MacDonald52k
2
votes
1
answer
513
views
1
answer
5
votes
1
answer
875
views
1
answer
Possible error in TxDb.Mmusculus.UCSC.mm10.ensGene_3.4.0?
genomicfeatures txdb written 2.8 years ago by Chao-Jen Wong30 • updated 2.8 years ago by James W. MacDonald52k
0
votes
1
answer
583
views
1
answer
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