Showing: txdbreset
6
votes
2
answers
130
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2
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the coordinates of exons of RefSeq or ENSEMBL genes
txdb exons genome written 11 weeks ago by Bogdan580 • updated 11 weeks ago by Martin Morgan ♦♦ 23k
7
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6
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1.0k
views
6
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Setting package name in makeTxDbPackage
genomicfeatures txdb written 4.4 years ago by Diego Diez730 • updated 4.4 years ago by Marc Carlson7.2k
3
votes
1
answer
2.4k
views
1
answer
Installation of TxDb.Hsapiens.UCSC.hg19.knownGene fails.
biocinstaller installation txdb written 4.8 years ago by Laurent Gatto1.2k • updated 4.7 years ago by Marc Carlson7.2k
0
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2
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747
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2
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0
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1
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607
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1
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5
votes
1
answer
859
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1
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Possible error in TxDb.Mmusculus.UCSC.mm10.ensGene_3.4.0?
genomicfeatures txdb written 2.6 years ago by Chao-Jen Wong30 • updated 2.6 years ago by James W. MacDonald51k
3
votes
3
answers
487
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3
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2
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2
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950
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2
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0
votes
1
answer
278
views
1
answer
TxDb basic question
txdb txdb.mmulatta.ucsc.rhemac8.refgene written 16 months ago by Brian Smith120 • updated 15 months ago by daniel.vantwisk50
0
votes
1
answer
338
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1
answer
0
votes
0
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396
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0
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2
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1
answer
829
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1
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Setting genome information on a TxDb object
genomicfeatures txdb written 4.4 years ago by Diego Diez730 • updated 4.4 years ago by Hervé Pagès ♦♦ 14k
0
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1
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1.3k
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1
answer
2
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2
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1.3k
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2
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0
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2
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523
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2
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0
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3
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646
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3
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4
votes
1
answer
1.3k
views
1
answer
0
votes
1
answer
824
views
1
answer
extracting promoter region error for A.thaliana
txdb promoter region written 3.7 years ago by sekawaiwai200620 • updated 3.7 years ago by Martin Morgan ♦♦ 23k
1
vote
1
answer
784
views
1
answer
problem creating txdb object and bsgenome for solanum pennellii
bsgenome promoter txdb written 3.7 years ago by sekawaiwai200620 • updated 3.7 years ago by Martin Morgan ♦♦ 23k
2
votes
1
answer
637
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1
answer
0
votes
1
answer
697
views
1
answer
How to find index position of desired feature_by in TxDb granges?
genomicfeatures granges txdb written 3.6 years ago by vinod.acear40 • updated 3.6 years ago by Martin Morgan ♦♦ 23k
4
votes
1
answer
1.0k
views
1
answer
0
votes
0
answers
588
views
0
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extractUpstreamSeqs with custom genome, no gene_id shown
featureextraction genomicfeatures genomicranges txdb written 3.5 years ago by wd30 • updated 3.5 years ago by Martin Morgan ♦♦ 23k
7
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2
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1.6k
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2
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0
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2
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558
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2
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how to get transcript annotation (unique)
txdb written 3.5 years ago by K50
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