Showing: tximportreset
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tximport and de novo transcriptome
tximport salmon rna seq de novo written 7 months ago by RMRG10 • updated 7 months ago by James W. MacDonald50k
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output of the function "makeCountsFromAbundance"
tximport written 19 days ago by capricygcapricyg0 • updated 19 days ago by James W. MacDonald50k
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7 follow
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Trouble with Tximport
salmon tximport written 3.1 years ago by smithng121530 • updated 3.1 years ago by Michael Love23k
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should I use rsem's summary to genes or tximport's?
tximport written 3.0 years ago by ty.thomson10 • updated 3.0 years ago by Michael Love23k
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running tximport for salmon quants
tximport readr written 2.9 years ago by Hadi Gharibi0 • updated 2.9 years ago by Michael Love23k
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Gene level exploratory data analysis from tximport results
edger deseq2 tximport written 2.9 years ago by Steve Lianoglou12k • updated 2.9 years ago by Michael Love23k
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Any trick to use "tximport" for converting a simple read count table ?
tximport written 2.7 years ago by Akira Imamoto0 • updated 2.7 years ago by Michael Love23k
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Problem with tximport(reader = read_tsv) and workaround
tximport readr read_tsv written 2.6 years ago by Jenny Drnevich1.9k • updated 2.6 years ago by Michael Love23k
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How to filter tximport output for edgeR?
edger rna-seq salmon tximport written 2.6 years ago by Peter0 • updated 2.6 years ago by Michael Love23k
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Non-integer counts from tximport OK for edgeR / DESeq2?
edger deseq2 tximport written 2.6 years ago by Jenny Drnevich1.9k • updated 2.6 years ago by Michael Love23k
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Using tximport to read in data from sailfish experiment
rnaseq sailfish tximport written 2.5 years ago by lina.faller0 • updated 2.5 years ago by Michael Love23k
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RNA-seq analysis without replicates using tximport and DESeq2
rnaseq deseq2 tximport written 2.5 years ago by Endre Sebestyen60 • updated 2.5 years ago by Michael Love23k
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475
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tximport RSEM error
tximport written 2.3 years ago by riccardo70 • updated 2.3 years ago by Michael Love23k
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How to remove genes with 0 counts in tximport?
deseq deseq2 tximport tximportdata written 2.3 years ago by Peter Alto10 • updated 2.3 years ago by Michael Love23k
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6 follow
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txImport: a gene seems missing from the sample data
tximport tximportdata written 2.2 years ago by alexlok0 • updated 2.2 years ago by Michael Love23k
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tximport - using hg38 with RefSeq (NM) and Gene Symbol
salmon hg38 tximport tx2gene.csv written 2.2 years ago by seb.boegel0 • updated 2.2 years ago by Michael Love23k
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tximport error reading salmon quantification files...
salmon tximport written 2.2 years ago by nschurch10 • updated 2.2 years ago by James W. MacDonald50k
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Is there any point to TMM-normalize TPM prior to limma-voom?
edger voom tximport limma-voom written 2.1 years ago by johnmcma10 • updated 2.1 years ago by Ryan C. Thompson7.3k
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unable to get tximport to work on data from kallisto
tximport kallisto written 2.0 years ago by swamyvinny10 • updated 2.0 years ago by Steve Lianoglou12k
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