Showing: tximportreset
3
votes
2
answers
323
views
2
answers
tximport and de novo transcriptome
tximport salmon rna seq de novo written 9 months ago by RMRG10 • updated 9 months ago by James W. MacDonald50k
2
votes
2
answers
231
views
2
answers
0
votes
2
answers
171
views
2
answers
0
votes
2
answers
85
views
2
answers
output of the function "makeCountsFromAbundance"
tximport written 11 weeks ago by capricygcapricyg0 • updated 11 weeks ago by James W. MacDonald50k
5
votes
2
answers
218
views
2
answers
Correct use of tximport in combination with edgeR cpm()
edger tximport written 9 weeks ago by ATpoint10 • updated 9 weeks ago by James W. MacDonald50k
5
votes
1
answer
2.3k
views
7 follow
1
answer
Trouble with Tximport
salmon tximport written 3.2 years ago by smithng121530 • updated 3.2 years ago by Michael Love24k
3
votes
1
answer
1.3k
views
1
answer
should I use rsem's summary to genes or tximport's?
tximport written 3.2 years ago by ty.thomson10 • updated 3.2 years ago by Michael Love24k
4
votes
1
answer
1.2k
views
1
answer
running tximport for salmon quants
tximport readr written 3.1 years ago by Hadi Gharibi0 • updated 3.1 years ago by Michael Love24k
3
votes
1
answer
1.3k
views
1
answer
Gene level exploratory data analysis from tximport results
edger deseq2 tximport written 3.1 years ago by Steve Lianoglou12k • updated 3.1 years ago by Michael Love24k
2
votes
1
answer
930
views
1
answer
Any trick to use "tximport" for converting a simple read count table ?
tximport written 2.9 years ago by Akira Imamoto0 • updated 2.9 years ago by Michael Love24k
4
votes
1
answer
1.2k
views
1
answer
Problem with tximport(reader = read_tsv) and workaround
tximport readr read_tsv written 2.8 years ago by Jenny Drnevich1.9k • updated 2.8 years ago by Michael Love24k
1
vote
1
answer
721
views
1
answer
How to filter tximport output for edgeR?
edger rna-seq salmon tximport written 2.8 years ago by Peter0 • updated 2.8 years ago by Michael Love24k
3
votes
1
answer
2.2k
views
1
answer
Non-integer counts from tximport OK for edgeR / DESeq2?
edger deseq2 tximport written 2.7 years ago by Jenny Drnevich1.9k • updated 2.7 years ago by Michael Love24k
0
votes
1
answer
500
views
1
answer
0
votes
1
answer
899
views
1
answer
Using tximport to read in data from sailfish experiment
rnaseq sailfish tximport written 2.7 years ago by lina.faller0 • updated 2.7 years ago by Michael Love24k
2
votes
1
answer
633
views
1
answer
RNA-seq analysis without replicates using tximport and DESeq2
rnaseq deseq2 tximport written 2.7 years ago by Endre Sebestyen60 • updated 2.7 years ago by Michael Love24k
0
votes
1
answer
500
views
1
answer
tximport RSEM error
tximport written 2.5 years ago by ribioinfo70 • updated 2.5 years ago by Michael Love24k
0
votes
1
answer
738
views
1
answer
How to remove genes with 0 counts in tximport?
deseq deseq2 tximport tximportdata written 2.5 years ago by Peter Alto10 • updated 2.5 years ago by Michael Love24k
7
votes
1
answer
1.3k
views
6 follow
1
answer
3
votes
1
answer
1.1k
views
1
answer
txImport: a gene seems missing from the sample data
tximport tximportdata written 2.4 years ago by alexlok0 • updated 2.4 years ago by Michael Love24k
2
votes
1
answer
1.1k
views
1
answer
tximport - using hg38 with RefSeq (NM) and Gene Symbol
salmon hg38 tximport tx2gene.csv written 2.4 years ago by seb.boegel0 • updated 2.4 years ago by Michael Love24k
0
votes
1
answer
958
views
1
answer
tximport error reading salmon quantification files...
salmon tximport written 2.4 years ago by nschurch10 • updated 2.4 years ago by James W. MacDonald50k
5
votes
1
answer
2.2k
views
1
answer
Is there any point to TMM-normalize TPM prior to limma-voom?
edger voom tximport limma-voom written 2.3 years ago by johnmcma10 • updated 2.3 years ago by Ryan C. Thompson7.3k
1
vote
1
answer
1.0k
views
1
answer
6
votes
1
answer
2.1k
views
1
answer
<prev • 149 results • page 2 of 6 • next >

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 185 users visited in the last hour