Showing: tximportreset
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1
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241
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tximport and its version
stringtie tximport rna-seq analysis written 7 months ago by Mithil Gaikwad0 • updated 7 months ago by James W. MacDonald50k
3
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1
answer
229
views
1
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Correct usage of tximport counts in edgeR without offset matrix.
edger rna-seq tximport written 6 months ago by ttekath0 • updated 6 months ago by James W. MacDonald50k
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226
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1
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0
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1
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222
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1
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tximport error with kallisto .h5 files
deseq2 tximport kallisto written 5 months ago by steve.standage0 • updated 5 months ago by Michael Love24k
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1
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217
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1
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Error : Salmon tximport to DESeq2
deseq2 tximport written 5 months ago by saddamhusain770 • updated 5 months ago by Michael Love24k
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2
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158
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2
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0
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1
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119
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1
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DESeqFromMatrix for 3'end data via tximport; non-integer values
deseq2 tximport written 4 months ago by cats_dogs20 • updated 4 months ago by Michael Love24k
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1
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170
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1
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2
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1
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116
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1
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0
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1
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136
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1
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Htseq files import via tximport
tximport importer written 4 months ago by sally.badawi0 • updated 4 months ago by Michael Love24k
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1
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142
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1
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[deseq2] normalization between samples after merging transcripts into genes
deseq2 tximport written 4 months ago by marie0 • updated 3 months ago by Michael Love24k
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1
answer
292
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1
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0
votes
1
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117
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Counts, abundance in Tximport
tximport written 3 months ago by hong0
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157
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Normalisation for count data visualisation only
normalization deseq2 salmon tximport written 3 months ago by Alex So0 • updated 3 months ago by Michael Love24k
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1
answer
110
views
1
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quant.sf files and tximport, transcripts not recognized
salmon tximport written 11 weeks ago by Merlin 10 • updated 11 weeks ago by Michael Love24k
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1
answer
103
views
1
answer
dtuScaledTPM vs lengthScaledTPM in DTU analysis
salmon tpm tximport dtu rnaseqdtu written 11 weeks ago by fiona.dick9110 • updated 11 weeks ago by Michael Love24k
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1
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82
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1
answer
1
vote
1
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83
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tximport and txOut
deseq2 tximport written 8 weeks ago by Merlin 10 • updated 8 weeks ago by Michael Love24k
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1
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101
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tximport, Kallisto and Deseq2 (quick answer)
deseq2 counts tximport kallisto written 7 weeks ago by Mozart10 • updated 7 weeks ago by Michael Love24k
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2
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70
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2
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output of the function "makeCountsFromAbundance"
tximport written 7 weeks ago by capricygcapricyg0 • updated 7 weeks ago by James W. MacDonald50k
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1
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52
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1
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Robust FPM with normalization factors (from tximport)?
normalization deseq2 tximport written 6 weeks ago by Roger0 • updated 6 weeks ago by Michael Love24k
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1
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84
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1
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0
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1
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67
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Salmon / tximport
deseq2 tximport written 17 days ago by polaxgr10 • updated 17 days ago by Michael Love24k
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1
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68
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how to set offset matrix to Deseq2 differential analysis
deseq2 tximport kallisto written 15 days ago by qwzhang06010 • updated 15 days ago by Michael Love24k
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24
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inferential replicates in Kallisto when summarising values via tximport
tximport written 2 days ago by Mozart10 • updated 2 days ago by Michael Love24k
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