Showing: tximportreset
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8 follow
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Trouble with Tximport
salmon tximport written 3.1 years ago by smithng121530 • updated 3.1 years ago by Michael Love24k
5
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1
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1
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Is there any point to TMM-normalize TPM prior to limma-voom?
edger voom tximport limma-voom written 2.2 years ago by johnmcma10 • updated 2.2 years ago by Ryan C. Thompson7.3k
6
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1
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3
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1
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Non-integer counts from tximport OK for edgeR / DESeq2?
edger deseq2 tximport written 2.6 years ago by Jenny Drnevich1.9k • updated 2.6 years ago by Michael Love24k
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unable to get tximport to work on data from kallisto
tximport kallisto written 2.1 years ago by swamyvinny10 • updated 2.1 years ago by Steve Lianoglou12k
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3
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should I use rsem's summary to genes or tximport's?
tximport written 3.1 years ago by ty.thomson10 • updated 3.1 years ago by Michael Love24k
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Gene level exploratory data analysis from tximport results
edger deseq2 tximport written 3.0 years ago by Steve Lianoglou12k • updated 3.0 years ago by Michael Love24k
7
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1
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1.2k
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6 follow
1
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4
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1.2k
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running tximport for salmon quants
tximport readr written 3.0 years ago by Hadi Gharibi0 • updated 3.0 years ago by Michael Love24k
4
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1
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1.2k
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1
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Problem with tximport(reader = read_tsv) and workaround
tximport readr read_tsv written 2.7 years ago by Jenny Drnevich1.9k • updated 2.7 years ago by Michael Love24k
2
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1
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1.1k
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1
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tximport - using hg38 with RefSeq (NM) and Gene Symbol
salmon hg38 tximport tx2gene.csv written 2.3 years ago by seb.boegel0 • updated 2.3 years ago by Michael Love24k
0
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(very) conflicting results with DESeq2 between versions
rnaseq deseq2 R tximport kallisto written 2.0 years ago by birgittenilsson0 • updated 2.0 years ago by Michael Love24k
1
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1
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tximport using for data generated from other tools
salmon tximport express written 2.0 years ago by saumya.kumar0 • updated 13 months ago by Michael Love24k
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3
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DESeqDataSetFromTximport with kallisto abundances.
deseq2 tximport written 2.0 years ago by ben30 • updated 20 months ago by Ming Wang0
3
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1
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txImport: a gene seems missing from the sample data
tximport tximportdata written 2.3 years ago by alexlok0 • updated 2.3 years ago by Michael Love24k
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