3
votes
1
answer
1.3k
views
1
answer
Quality filtering of exactSNP-generated VCF files
variantannotation exactsnp qc written 3.0 years ago by daniel.silvestre50 • updated 3.0 years ago by Wei Shi2.7k
5
votes
4
answers
961
views
5 follow
4
answers
Error in reading 1000 genomes data
variantannotation written 3.0 years ago by Wade Copeland20 • updated 20 months ago by Martin Morgan ♦♦ 20k
0
votes
0
answers
362
views
0
answers
0
votes
0
answers
452
views
0
answers
0
votes
2
answers
474
views
2
answers
Finding coding SNPs with predictCoding
snp variantannotation bsgenome snplocs written 5.8 years ago by Alex Gutteridge650 • updated 5.7 years ago by Valerie Obenchain ♦♦ 6.4k
0
votes
1
answer
553
views
1
answer
Complementing alleles in a VCF
variantannotation bsgenome genomes written 5.6 years ago by Alex Gutteridge650 • updated 5.6 years ago by Martin Morgan ♦♦ 20k
0
votes
3
answers
538
views
3
answers
problems with strand in predictCoding
variantannotation annotation bsgenome written 5.6 years ago by Jeremiah Degenhardt50 • updated 5.6 years ago by bnorthoff@web.de20
0
votes
1
answer
498
views
1
answer
Subsetting "sites only" VCF objects
variantannotation written 5.2 years ago by Richard Pearson60 • updated 5.2 years ago by Valerie Obenchain ♦♦ 6.4k
0
votes
1
answer
471
views
1
answer
Why is writeVcf() slow?
variantannotation written 5.1 years ago by Peter Hickey290 • updated 5.1 years ago by Valerie Obenchain ♦♦ 6.4k
0
votes
1
answer
514
views
1
answer
VariantAnnotation ALT Field
variantannotation written 5.0 years ago by Samuel Younkin60 • updated 5.0 years ago by Paul Shannon740
0
votes
1
answer
605
views
1
answer
merging VCF files
variantannotation written 4.9 years ago by Stephanie M. Gogarten530 • updated 4.9 years ago by Valerie Obenchain ♦♦ 6.4k
0
votes
1
answer
243
views
1
answer
geneid to gene name conversion
variantannotation convert biomart written 4.8 years ago by Matthew Liebers10 • updated 4.8 years ago by Paul Shannon740
0
votes
1
answer
404
views
1
answer
VariantAnnotation: fine define Locating variants in and around genes
snp variantannotation written 4.8 years ago by Fabrice Tourre950 • updated 4.8 years ago by Valerie Obenchain ♦♦ 6.4k
1
vote
2
answers
1.7k
views
2
answers
merging VCF files
variantannotation written 4.8 years ago by Valerie Obenchain ♦♦ 6.4k • updated 4.7 years ago by Stephanie M. Gogarten530
1
vote
1
answer
463
views
1
answer
VariantAnnotation package with snp location
snp variantannotation written 4.8 years ago by Fabrice Tourre950 • updated 4.8 years ago by Tim Triche4.2k
0
votes
1
answer
256
views
1
answer
Subsetting vcf file by subject
variantannotation annotation written 4.7 years ago by Taub, Margaret10 • updated 4.7 years ago by Valerie Obenchain ♦♦ 6.4k
0
votes
1
answer
744
views
1
answer
trouble installing affycoretools for R 3.0
variantannotation go bsgenome affycoretools ggbio written 4.6 years ago by Jenny Drnevich1.9k • updated 4.6 years ago by James W. MacDonald45k
0
votes
1
answer
769
views
1
answer
Help needed! What wrong with VariantAnnotation and TCGA vcfs
variantannotation genomes written 4.6 years ago by ying chen340 • updated 4.6 years ago by Martin Morgan ♦♦ 20k
0
votes
0
answers
409
views
0
answers
0
votes
0
answers
311
views
0
answers
0
votes
1
answer
486
views
1
answer
writeVcf bug
variantannotation written 4.6 years ago by Richard Pearson60 • updated 4.6 years ago by Valerie Obenchain ♦♦ 6.4k
0
votes
1
answer
1.2k
views
1
answer
Problem reading VCF file using readVcf from package VariantAnnotation
variantannotation written 4.6 years ago by UBodenhofer200 • updated 4.6 years ago by Valerie Obenchain ♦♦ 6.4k
0
votes
1
answer
663
views
1
answer
VariantAnnotation and distance to genes
variantannotation written 4.5 years ago by Gad Abraham20 • updated 4.5 years ago by James W. MacDonald45k
0
votes
2
answers
823
views
2
answers
0
votes
2
answers
797
views
2
answers
'namespace:Biostrings' error when installing VariantAnnotation
variantannotation written 4.4 years ago by Thomas Damm Als20 • updated 4.4 years ago by Steve Lianoglou12k
<prev • 163 results • page 1 of 7 • next >

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 233 users visited in the last hour