3
votes
1
answer
1.5k
views
1
answer
Quality filtering of exactSNP-generated VCF files
variantannotation exactsnp qc written 3.6 years ago by daniel.silvestre50 • updated 3.6 years ago by Wei Shi2.8k
5
votes
4
answers
1.2k
views
5 follow
4
answers
Error in reading 1000 genomes data
variantannotation written 3.6 years ago by Wade Copeland20 • updated 2.3 years ago by Martin Morgan ♦♦ 21k
0
votes
0
answers
432
views
0
answers
0
votes
0
answers
557
views
0
answers
0
votes
2
answers
589
views
2
answers
Finding coding SNPs with predictCoding
snp variantannotation bsgenome snplocs written 6.3 years ago by Alex Gutteridge650 • updated 6.3 years ago by Valerie Obenchain ♦♦ 6.5k
0
votes
1
answer
631
views
1
answer
Complementing alleles in a VCF
variantannotation bsgenome genomes written 6.2 years ago by Alex Gutteridge650 • updated 6.2 years ago by Martin Morgan ♦♦ 21k
0
votes
3
answers
674
views
3
answers
problems with strand in predictCoding
variantannotation annotation bsgenome written 6.2 years ago by Jeremiah Degenhardt50 • updated 6.2 years ago by bnorthoff@web.de20
0
votes
1
answer
600
views
1
answer
Subsetting "sites only" VCF objects
variantannotation written 5.8 years ago by Richard Pearson60 • updated 5.8 years ago by Valerie Obenchain ♦♦ 6.5k
0
votes
1
answer
607
views
1
answer
Why is writeVcf() slow?
variantannotation written 5.7 years ago by Peter Hickey370 • updated 5.7 years ago by Valerie Obenchain ♦♦ 6.5k
0
votes
1
answer
579
views
1
answer
VariantAnnotation ALT Field
variantannotation written 5.6 years ago by Samuel Younkin60 • updated 5.6 years ago by Paul Shannon740
0
votes
1
answer
770
views
1
answer
merging VCF files
variantannotation written 5.4 years ago by Stephanie M. Gogarten560 • updated 5.4 years ago by Valerie Obenchain ♦♦ 6.5k
0
votes
1
answer
303
views
1
answer
geneid to gene name conversion
variantannotation convert biomart written 5.4 years ago by Matthew Liebers10 • updated 5.4 years ago by Paul Shannon740
0
votes
1
answer
450
views
1
answer
VariantAnnotation: fine define Locating variants in and around genes
snp variantannotation written 5.4 years ago by Fabrice Tourre970 • updated 5.4 years ago by Valerie Obenchain ♦♦ 6.5k
1
vote
2
answers
2.2k
views
2
answers
merging VCF files
variantannotation written 5.4 years ago by Valerie Obenchain ♦♦ 6.5k • updated 5.3 years ago by Stephanie M. Gogarten560
1
vote
1
answer
576
views
1
answer
VariantAnnotation package with snp location
snp variantannotation written 5.4 years ago by Fabrice Tourre970 • updated 5.4 years ago by Tim Triche4.2k
0
votes
1
answer
313
views
1
answer
Subsetting vcf file by subject
variantannotation annotation written 5.3 years ago by Taub, Margaret10 • updated 5.3 years ago by Valerie Obenchain ♦♦ 6.5k
0
votes
1
answer
892
views
1
answer
trouble installing affycoretools for R 3.0
variantannotation go bsgenome affycoretools ggbio written 5.2 years ago by Jenny Drnevich1.9k • updated 5.2 years ago by James W. MacDonald46k
0
votes
1
answer
886
views
1
answer
Help needed! What wrong with VariantAnnotation and TCGA vcfs
variantannotation genomes written 5.2 years ago by ying chen340 • updated 5.2 years ago by Martin Morgan ♦♦ 21k
0
votes
0
answers
491
views
0
answers
0
votes
0
answers
373
views
0
answers
0
votes
1
answer
546
views
1
answer
writeVcf bug
variantannotation written 5.2 years ago by Richard Pearson60 • updated 5.2 years ago by Valerie Obenchain ♦♦ 6.5k
0
votes
1
answer
1.6k
views
1
answer
Problem reading VCF file using readVcf from package VariantAnnotation
variantannotation written 5.2 years ago by UBodenhofer250 • updated 5.2 years ago by Valerie Obenchain ♦♦ 6.5k
0
votes
1
answer
809
views
1
answer
VariantAnnotation and distance to genes
variantannotation written 5.1 years ago by Gad Abraham20 • updated 5.1 years ago by James W. MacDonald46k
0
votes
2
answers
1.0k
views
2
answers
0
votes
2
answers
941
views
2
answers
'namespace:Biostrings' error when installing VariantAnnotation
variantannotation written 5.0 years ago by Thomas Damm Als20 • updated 5.0 years ago by Steve Lianoglou12k
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