5
votes
4
answers
1.1k
views
5 follow
4
answers
Error in reading 1000 genomes data
variantannotation written 3.4 years ago by Wade Copeland20 • updated 2.1 years ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
629
views
1
answer
3
votes
1
answer
1.4k
views
1
answer
Quality filtering of exactSNP-generated VCF files
variantannotation exactsnp qc written 3.4 years ago by daniel.silvestre50 • updated 3.4 years ago by Wei Shi2.8k
0
votes
1
answer
564
views
1
answer
Why is writeVcf() slow?
variantannotation written 5.5 years ago by Peter Hickey330 • updated 5.5 years ago by Valerie Obenchain ♦♦ 6.4k
0
votes
1
answer
851
views
1
answer
trouble installing affycoretools for R 3.0
variantannotation go bsgenome affycoretools ggbio written 5.0 years ago by Jenny Drnevich1.9k • updated 5.0 years ago by James W. MacDonald46k
0
votes
1
answer
761
views
1
answer
VariantAnnotation and distance to genes
variantannotation written 4.9 years ago by Gad Abraham20 • updated 4.9 years ago by James W. MacDonald46k
4
votes
1
answer
684
views
1
answer
0
votes
1
answer
1.3k
views
1
answer
Incorrect row names when a VCF has multiple ALTs.
variantannotation vcf written 3.5 years ago by bicycle18850 • updated 3.4 years ago by Valerie Obenchain ♦♦ 6.4k
0
votes
0
answers
536
views
0
answers
2
votes
0
answers
641
views
0
answers
7
votes
3
answers
428
views
3
answers
Extracting first member of each element of a matrix of lists
variantannotation vcf written 3.0 years ago by Sean Davis21k • updated 3.0 years ago by Michael Lawrence10.0k
4
votes
2
answers
539
views
2
answers
Best way to import from multiple VCF files?
variantannotation written 21 months ago by Kipper Fletez-Brant150 • updated 21 months ago by shepherl ♦♦ 560
3
votes
1
answer
557
views
1
answer
Annotate VCFs with Cosmic (ExAC etc.) fields
variantannotation cosmic exac written 17 months ago by markus.riester60 • updated 17 months ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
345
views
1
answer
Error in c(DataFrameList(META = meta), tbls[unique(tags)])
variantannotation written 12 months ago by ddzhangzz0 • updated 12 months ago by Hervé Pagès ♦♦ 13k
0
votes
1
answer
605
views
1
answer
Complementing alleles in a VCF
variantannotation bsgenome genomes written 6.0 years ago by Alex Gutteridge650 • updated 6.0 years ago by Martin Morgan ♦♦ 21k
0
votes
3
answers
631
views
3
answers
problems with strand in predictCoding
variantannotation annotation bsgenome written 6.0 years ago by Jeremiah Degenhardt50 • updated 6.0 years ago by bnorthoff@web.de20
0
votes
1
answer
560
views
1
answer
VariantAnnotation ALT Field
variantannotation written 5.4 years ago by Samuel Younkin60 • updated 5.4 years ago by Paul Shannon740
0
votes
1
answer
527
views
1
answer
writeVcf bug
variantannotation written 5.0 years ago by Richard Pearson60 • updated 5.0 years ago by Valerie Obenchain ♦♦ 6.4k
0
votes
2
answers
974
views
2
answers
0
votes
8
answers
605
views
8
answers
0
votes
1
answer
579
views
1
answer
VariantAnnotation - extracting AD and PL fields
variantannotation written 4.0 years ago by Lavinia Gordon20 • updated 4.0 years ago by Michael Lawrence10.0k
0
votes
2
answers
1.0k
views
2
answers
Vranges (somatic signature) VariantAnnotation
variantannotation software error written 3.5 years ago by humaasif790 • updated 3.5 years ago by Steve Lianoglou12k
7
votes
1
answer
587
views
1
answer
writeVcf no longer writes records for ungenotyped data
variantannotation written 3.4 years ago by Daniel Cameron40 • updated 3.4 years ago by Valerie Obenchain ♦♦ 6.4k
0
votes
2
answers
964
views
2
answers
4
votes
5
answers
625
views
5
answers
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