5
votes
4
answers
1.2k
views
5 follow
4
answers
Error in reading 1000 genomes data
variantannotation written 3.7 years ago by Wade Copeland20 • updated 2.4 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
681
views
1
answer
3
votes
1
answer
1.5k
views
1
answer
Quality filtering of exactSNP-generated VCF files
variantannotation exactsnp qc written 3.7 years ago by daniel.silvestre50 • updated 3.7 years ago by Wei Shi2.8k
0
votes
1
answer
617
views
1
answer
Why is writeVcf() slow?
variantannotation written 5.7 years ago by Peter Hickey370 • updated 5.7 years ago by Valerie Obenchain ♦♦ 6.5k
0
votes
1
answer
903
views
1
answer
trouble installing affycoretools for R 3.0
variantannotation go bsgenome affycoretools ggbio written 5.3 years ago by Jenny Drnevich1.9k • updated 5.3 years ago by James W. MacDonald46k
0
votes
1
answer
824
views
1
answer
VariantAnnotation and distance to genes
variantannotation written 5.2 years ago by Gad Abraham20 • updated 5.2 years ago by James W. MacDonald46k
4
votes
1
answer
722
views
1
answer
0
votes
1
answer
1.4k
views
1
answer
Incorrect row names when a VCF has multiple ALTs.
variantannotation vcf written 3.7 years ago by bicycle18850 • updated 3.7 years ago by Valerie Obenchain ♦♦ 6.5k
0
votes
0
answers
568
views
0
answers
2
votes
0
answers
712
views
0
answers
7
votes
3
answers
445
views
3
answers
Extracting first member of each element of a matrix of lists
variantannotation vcf written 3.2 years ago by Sean Davis21k • updated 3.2 years ago by Michael Lawrence10k
4
votes
2
answers
597
views
2
answers
Best way to import from multiple VCF files?
variantannotation written 24 months ago by Kipper Fletez-Brant150 • updated 24 months ago by shepherl ♦♦ 650
3
votes
1
answer
637
views
1
answer
Annotate VCFs with Cosmic (ExAC etc.) fields
variantannotation cosmic exac written 20 months ago by markus.riester90 • updated 20 months ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
407
views
1
answer
Error in c(DataFrameList(META = meta), tbls[unique(tags)])
variantannotation written 15 months ago by ddzhangzz0 • updated 15 months ago by Hervé Pagès ♦♦ 13k
0
votes
1
answer
634
views
1
answer
Complementing alleles in a VCF
variantannotation bsgenome genomes written 6.3 years ago by Alex Gutteridge650 • updated 6.3 years ago by Martin Morgan ♦♦ 22k
0
votes
3
answers
683
views
3
answers
problems with strand in predictCoding
variantannotation annotation bsgenome written 6.3 years ago by Jeremiah Degenhardt50 • updated 6.2 years ago by bnorthoff@web.de20
0
votes
1
answer
585
views
1
answer
VariantAnnotation ALT Field
variantannotation written 5.7 years ago by Samuel Younkin60 • updated 5.7 years ago by Paul Shannon740
0
votes
1
answer
552
views
1
answer
writeVcf bug
variantannotation written 5.3 years ago by Richard Pearson60 • updated 5.3 years ago by Valerie Obenchain ♦♦ 6.5k
0
votes
2
answers
1.0k
views
2
answers
0
votes
8
answers
633
views
8
answers
0
votes
1
answer
628
views
1
answer
VariantAnnotation - extracting AD and PL fields
variantannotation written 4.3 years ago by Lavinia Gordon20 • updated 4.3 years ago by Michael Lawrence10k
0
votes
2
answers
1.1k
views
2
answers
Vranges (somatic signature) VariantAnnotation
variantannotation software error written 3.8 years ago by humaasif790 • updated 3.8 years ago by Steve Lianoglou12k
7
votes
1
answer
606
views
1
answer
writeVcf no longer writes records for ungenotyped data
variantannotation written 3.7 years ago by Daniel Cameron40 • updated 3.7 years ago by Valerie Obenchain ♦♦ 6.5k
0
votes
2
answers
1.0k
views
2
answers
4
votes
5
answers
648
views
5
answers
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