5
votes
4
answers
1.3k
views
5 follow
4
answers
Error in reading 1000 genomes data
variantannotation written 3.9 years ago by Wade Copeland20 • updated 2.6 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
754
views
1
answer
3
votes
1
answer
1.6k
views
1
answer
Quality filtering of exactSNP-generated VCF files
variantannotation exactsnp qc written 3.9 years ago by daniel.silvestre50 • updated 3.9 years ago by Wei Shi2.9k
0
votes
1
answer
706
views
1
answer
Why is writeVcf() slow?
variantannotation written 6.0 years ago by Peter Hickey380 • updated 6.0 years ago by Valerie Obenchain ♦♦ 6.6k
0
votes
1
answer
953
views
1
answer
trouble installing affycoretools for R 3.0
variantannotation go bsgenome affycoretools ggbio written 5.5 years ago by Jenny Drnevich1.9k • updated 5.5 years ago by James W. MacDonald48k
0
votes
1
answer
873
views
1
answer
VariantAnnotation and distance to genes
variantannotation written 5.4 years ago by Gad Abraham20 • updated 5.4 years ago by James W. MacDonald48k
4
votes
1
answer
758
views
1
answer
0
votes
1
answer
1.4k
views
1
answer
Incorrect row names when a VCF has multiple ALTs.
variantannotation vcf written 4.0 years ago by bicycle18850 • updated 3.9 years ago by Valerie Obenchain ♦♦ 6.6k
0
votes
0
answers
605
views
0
answers
2
votes
0
answers
779
views
0
answers
7
votes
3
answers
469
views
3
answers
Extracting first member of each element of a matrix of lists
variantannotation vcf written 3.5 years ago by Sean Davis21k • updated 3.5 years ago by Michael Lawrence10k
4
votes
2
answers
669
views
2
answers
Best way to import from multiple VCF files?
variantannotation written 2.2 years ago by Kipper Fletez-Brant150 • updated 2.2 years ago by shepherl ♦♦ 830
3
votes
1
answer
712
views
1
answer
Annotate VCFs with Cosmic (ExAC etc.) fields
variantannotation cosmic exac written 23 months ago by markus.riester110 • updated 23 months ago by Martin Morgan ♦♦ 22k
1
vote
0
answers
523
views
0
answers
0
votes
1
answer
468
views
1
answer
Error in c(DataFrameList(META = meta), tbls[unique(tags)])
variantannotation written 18 months ago by ddzhangzz0 • updated 18 months ago by Hervé Pagès ♦♦ 13k
0
votes
1
answer
668
views
1
answer
Complementing alleles in a VCF
variantannotation bsgenome genomes written 6.5 years ago by Alex Gutteridge650 • updated 6.5 years ago by Martin Morgan ♦♦ 22k
0
votes
3
answers
751
views
3
answers
problems with strand in predictCoding
variantannotation annotation bsgenome written 6.5 years ago by Jeremiah Degenhardt50 • updated 6.5 years ago by bnorthoff@web.de20
0
votes
1
answer
630
views
1
answer
VariantAnnotation ALT Field
variantannotation written 5.9 years ago by Samuel Younkin60 • updated 5.9 years ago by Paul Shannon740
0
votes
1
answer
578
views
1
answer
writeVcf bug
variantannotation written 5.5 years ago by Richard Pearson60 • updated 5.5 years ago by Valerie Obenchain ♦♦ 6.6k
0
votes
2
answers
1.1k
views
2
answers
0
votes
8
answers
669
views
8
answers
0
votes
1
answer
679
views
1
answer
VariantAnnotation - extracting AD and PL fields
variantannotation written 4.5 years ago by Lavinia Gordon20 • updated 4.5 years ago by Michael Lawrence10k
0
votes
2
answers
1.1k
views
2
answers
Vranges (somatic signature) VariantAnnotation
variantannotation software error written 4.0 years ago by humaasif790 • updated 4.0 years ago by Steve Lianoglou12k
7
votes
1
answer
649
views
1
answer
writeVcf no longer writes records for ungenotyped data
variantannotation written 4.0 years ago by Daniel Cameron40 • updated 4.0 years ago by Valerie Obenchain ♦♦ 6.6k
0
votes
2
answers
1.1k
views
2
answers
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