5
votes
4
answers
958
views
5 follow
4
answers
Error in reading 1000 genomes data
variantannotation written 3.0 years ago by Wade Copeland20 • updated 20 months ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
517
views
1
answer
3
votes
1
answer
1.3k
views
1
answer
Quality filtering of exactSNP-generated VCF files
variantannotation exactsnp qc written 3.0 years ago by daniel.silvestre50 • updated 3.0 years ago by Wei Shi2.7k
0
votes
1
answer
470
views
1
answer
Why is writeVcf() slow?
variantannotation written 5.1 years ago by Peter Hickey290 • updated 5.1 years ago by Valerie Obenchain ♦♦ 6.4k
0
votes
1
answer
744
views
1
answer
trouble installing affycoretools for R 3.0
variantannotation go bsgenome affycoretools ggbio written 4.6 years ago by Jenny Drnevich1.9k • updated 4.6 years ago by James W. MacDonald45k
0
votes
1
answer
662
views
1
answer
VariantAnnotation and distance to genes
variantannotation written 4.5 years ago by Gad Abraham20 • updated 4.5 years ago by James W. MacDonald45k
4
votes
1
answer
612
views
1
answer
0
votes
1
answer
1.2k
views
1
answer
Incorrect row names when a VCF has multiple ALTs.
variantannotation vcf written 3.0 years ago by bicycle18850 • updated 3.0 years ago by Valerie Obenchain ♦♦ 6.4k
0
votes
0
answers
471
views
0
answers
2
votes
0
answers
556
views
0
answers
7
votes
3
answers
385
views
3
answers
Extracting first member of each element of a matrix of lists
variantannotation vcf written 2.6 years ago by Sean Davis21k • updated 2.5 years ago by Michael Lawrence9.8k
4
votes
2
answers
446
views
2
answers
Best way to import from multiple VCF files?
variantannotation written 16 months ago by Kipper Fletez-Brant140 • updated 16 months ago by shepherl ♦♦ 510
3
votes
1
answer
431
views
1
answer
Annotate VCFs with Cosmic (ExAC etc.) fields
variantannotation cosmic exac written 12 months ago by markus.riester20 • updated 12 months ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
553
views
1
answer
Complementing alleles in a VCF
variantannotation bsgenome genomes written 5.6 years ago by Alex Gutteridge650 • updated 5.6 years ago by Martin Morgan ♦♦ 20k
0
votes
3
answers
537
views
3
answers
problems with strand in predictCoding
variantannotation annotation bsgenome written 5.6 years ago by Jeremiah Degenhardt50 • updated 5.6 years ago by bnorthoff@web.de20
0
votes
1
answer
513
views
1
answer
VariantAnnotation ALT Field
variantannotation written 5.0 years ago by Samuel Younkin60 • updated 5.0 years ago by Paul Shannon740
0
votes
1
answer
485
views
1
answer
writeVcf bug
variantannotation written 4.6 years ago by Richard Pearson60 • updated 4.6 years ago by Valerie Obenchain ♦♦ 6.4k
0
votes
2
answers
823
views
2
answers
0
votes
8
answers
548
views
8
answers
0
votes
1
answer
478
views
1
answer
VariantAnnotation - extracting AD and PL fields
variantannotation written 3.6 years ago by Lavinia Gordon20 • updated 3.6 years ago by Michael Lawrence9.8k
0
votes
2
answers
919
views
2
answers
Vranges (somatic signature) VariantAnnotation
variantannotation software error written 3.1 years ago by humaasif790 • updated 3.1 years ago by Steve Lianoglou12k
7
votes
1
answer
553
views
1
answer
writeVcf no longer writes records for ungenotyped data
variantannotation written 3.0 years ago by Daniel Cameron40 • updated 3.0 years ago by Valerie Obenchain ♦♦ 6.4k
0
votes
2
answers
873
views
2
answers
4
votes
5
answers
585
views
5
answers
4
votes
3
answers
665
views
3
answers
readVcfAsVRanges + FilterRules
variantannotation readvcfasvranges filtervcf filterrules written 2.7 years ago by Sigve Nakken50 • updated 2.7 years ago by Martin Morgan ♦♦ 20k
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