Showing: vcf • reset
Search
2
votes
2
answers
636
views
2
answers
readVCFAsVRanges in VariantAnnotation broken by an FTZ format?
variantannotation vcf readvcfasvranges written 3.4 years ago by Andy Lynch • 100 • updated 3.4 years ago by Michael Lawrence ♦ 11k
0
votes
1
answer
621
views
1
answer
annotating a vcf file containing Structural Variants
vcf written 3.2 years ago by Bogdan • 580
0
votes
1
answer
599
views
1
answer
vcfR package vector length error
vcf written 3.1 years ago by jenniewoo • 20 • updated 3.1 years ago by Martin Morgan ♦♦ 24k
3
votes
1
answer
473
views
1
answer
CollapsedVCF and ExpandedVCF rownames and vcfs with large ref/alt columns
variantannotation vcf written 3.0 years ago by Sean Davis ♦ 21k • updated 3.0 years ago by Valerie Obenchain • 6.7k
1
vote
3
answers
623
views
3
answers
about filtering variants from a VCF file
vcf written 2.9 years ago by Bogdan • 580
4
votes
3
answers
1.7k
views
3
answers
about collapsed and expanded vcf file
vcf written 2.9 years ago by Bogdan • 580 • updated 2.9 years ago by raggieapauly • 0
3
votes
1
answer
825
views
1
answer
about the use of subsetByFilter()
vcf written 2.9 years ago by Bogdan • 580 • updated 2.9 years ago by Martin Morgan ♦♦ 24k
2
votes
2
answers
780
views
2
answers
Best way to create a VRanges object from a large VCF file?
variantannotation vcf readvcf readvcfasvranges written 2.9 years ago by ruben.drews • 0 • updated 2.9 years ago by Michael Lawrence ♦ 11k
0
votes
0
answers
501
views
0
answers
Error in matrix
vcf bioconductor written 2.7 years ago by bkauf • 0
2
votes
2
answers
1.1k
views
2
answers
Select specific variants from vcf file
vcf written 2.7 years ago by Adam • 0 • updated 2.7 years ago by Martin Morgan ♦♦ 24k
5
votes
2
answers
659
views
2
answers
extracting Allele Read Counts
rsamtools vcf written 2.7 years ago by Bogdan • 580
2
votes
1
answer
1.1k
views
1
answer
VariantAnnotation: Error with ScanVcfParam
variantannotation vcf readvcf filtervcf scanvcfparam written 2.3 years ago by Didi • 10
0
votes
2
answers
488
views
2
answers
Error converting vcf to gds
snprelate vcf gds written 20 months ago by annat22 • 0 • updated 20 months ago by zhengx • 30
0
votes
1
answer
961
views
1
answer
VCF file non-SNP germline mutations
snp vcf purecn written 19 months ago by twtoal • 0 • updated 19 months ago by markus.riester • 110
0
votes
1
answer
330
views
1
answer
PureCN use of VCF QUAL column for filtering when column is dot
vcf purecn qual written 19 months ago by twtoal • 0 • updated 19 months ago by markus.riester • 110
2
votes
1
answer
454
views
1
answer
Error with R package motifbreakR while trying to read a vcf file with snps.from.file function
vcf snps motifbreakr motif analysis written 17 months ago by svlachavas • 740 • updated 17 months ago by Valerie Obenchain • 6.7k
0
votes
1
answer
235
views
1
answer
comparing 2 long BED files in R in an efficient way
vcf bed written 17 months ago by Bogdan • 580 • updated 17 months ago by GENOMIC_region • 0
3
votes
1
answer
312
views
1
answer
Problem when transforming Platypus vcf to VRanges
variantannotation vcf readvcf vranges written 17 months ago by david.mas • 0 • updated 17 months ago by Michael Lawrence ♦ 11k
0
votes
0
answers
314
views
0
answers
vcf to venn diagram
vcf snps venn diagram ggplot2 written 11 months ago by mictadlo • 0
0
votes
0
answers
141
views
0
answers
Bioconductor and WGS: recommended practices?
vcf variants wgs whole genome sequencing written 10 months ago by Vincent J. Carey, Jr. ♦ 6.3k
1
vote
1
answer
168
views
1
answer
VCF file does not include snp.id, can I still run SNPRelate for Relatedness Analysis? Data is output from STACKS for mangroves
snprelate vcf written 8 months ago by cav3gh • 0 • updated 8 months ago by Stephanie M. Gogarten • 740
1
vote
3
answers
142
views
3
answers
Help creating VRange object
somaticsignatures vcf vrange written 7 months ago by maisapinheiro12 • 0 • updated 7 months ago by Julian Gehring • 1.3k
0
votes
0
answers
158
views
0
answers
rbind VCF Two Objects Column Names Error
variantannotation vcf written 6 months ago by Dario Strbenac • 1.5k
0
votes
0
answers
84
views
0
answers
CustomProDB InputVcf() - Issue getting the GRanges INDEL object from VCF file
vcf customprodb gatk snv inputvcf written 5 months ago by Elena.M • 0
<prev • 49 results • page 2 of 2 • next >
Recent...
Replies
Votes
Awards • All »
Locations • All »
  • United States, 1 minute ago
  • France, 2 minutes ago
  • United States, 5 minutes ago
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 407 users visited in the last hour