10
votes
1
answer
1.5k
views
5 follow
1
answer
Bootstrap confidence intervals on RNA-seq expression from Kallisto
rnaseq limma edger deseq2 voom written 2.3 years ago by Sean Davis20k • updated 22 hours ago by Paul Harrison60
1
vote
2
answers
39
views
2
answers
Expression profile from $E from Voom
voom $elist written 1 day ago by anpham0 • updated 1 day ago by Steve Lianoglou12k
0
votes
0
answers
237
views
0
answers
limma voom for single factor
limma differential expression voom written 22 days ago by bumbum0 • updated 22 days ago by Gordon Smyth31k
1
vote
1
answer
165
views
1
answer
0
votes
1
answer
456
views
1
answer
0
votes
1
answer
562
views
1
answer
confusion with tximport options and resulting matrix
rnaseq limma voom tximport rsem written 8 weeks ago by arubio0 • updated 8 weeks ago by Gordon Smyth31k
2
votes
2
answers
120
views
2
answers
6
votes
1
answer
203
views
1
answer
differential expression analysis of htseq data with edgeR/voom
limma edger voom htseq rnaseq123 written 3 months ago by wd10 • updated 3 months ago by Aaron Lun16k
4
votes
1
answer
220
views
1
answer
Subject: Strange glitch in Voom curve resulting from batch effects
batcheffect limma voom covariate written 4 months ago by raf420 • updated 4 months ago by Gordon Smyth31k
1
vote
1
answer
212
views
1
answer
3
votes
1
answer
226
views
1
answer
2
votes
1
answer
577
views
1
answer
Is there any point to TMM-normalize TPM prior to limma-voom?
edger voom tximport limma-voom written 5 months ago by johnmcma0 • updated 5 months ago by Ryan C. Thompson5.9k
2
votes
1
answer
369
views
1
answer
0
votes
1
answer
363
views
1
answer
2
votes
1
answer
203
views
1
answer
2
votes
1
answer
196
views
1
answer
edgeR QL with voom weights
edger voom limma-voom written 7 months ago by gregory.l.stone10 • updated 7 months ago by Aaron Lun16k
7
votes
2
answers
305
views
2
answers
1
vote
3
answers
291
views
3
answers
1
vote
1
answer
252
views
1
answer
limma voom analysis with multiple comparisons
limma voom written 10 months ago by ea140220 • updated 10 months ago by Aaron Lun16k
3
votes
1
answer
286
views
1
answer
9
votes
3
answers
501
views
3
answers
DE for genes with very low counts using limma.
limma voom limma-trend written 11 months ago by maltethodberg40 • updated 11 months ago by Gordon Smyth31k
6
votes
1
answer
311
views
1
answer
Combining newer/older RNAseq data, batch correcting
rnaseq limma sva voom batch effect written 11 months ago by schrist110 • updated 11 months ago by Aaron Lun16k
1
vote
1
answer
265
views
1
answer
2
votes
2
answers
321
views
2
answers
Weird results (ribosomal proteins / Y-linked genes) in limma/voom
rnaseq limma voom written 11 months ago by blofeld0 • updated 11 months ago by Gordon Smyth31k
4
votes
2
answers
250
views
2
answers
Where is the source code for qAbundanceDist?
voom written 12 months ago by kjo10 • updated 12 months ago by Gordon Smyth31k
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