2
votes
3
answers
91
views
3
answers
voom command broken in limma_3.34.5?
limma voom written 10 days ago by sjk3140 • updated 9 days ago by Gordon Smyth32k
1
vote
1
answer
172
views
1
answer
0
votes
2
answers
141
views
2
answers
Subsetting an EList Object doesn't subset $sample.weights
limma voom elist written 4 weeks ago by Steve Pederson60 • updated 4 weeks ago by Gordon Smyth32k
4
votes
1
answer
161
views
1
answer
Improve limma-voom trend fit to noisy data
limma voom written 6 weeks ago by jma199130 • updated 6 weeks ago by Aaron Lun18k
0
votes
2
answers
166
views
2
answers
2
votes
1
answer
174
views
1
answer
block design to test two factors with limma
limma voom written 7 weeks ago by jfertaj20 • updated 6 weeks ago by Aaron Lun18k
3
votes
2
answers
161
views
2
answers
Paired Test - Design Matrix and Contrast Matrix Voom and Limma
limma voom paired samples written 7 weeks ago by rfbrhm0 • updated 7 weeks ago by Gordon Smyth32k
4
votes
2
answers
155
views
2
answers
0
votes
0
answers
129
views
0
answers
10
votes
1
answer
212
views
1
answer
0
votes
1
answer
97
views
1
answer
10
votes
1
answer
1.7k
views
5 follow
1
answer
Bootstrap confidence intervals on RNA-seq expression from Kallisto
rnaseq limma edger deseq2 voom written 2.6 years ago by Sean Davis21k • updated 4 months ago by Paul Harrison60
1
vote
2
answers
159
views
2
answers
Expression profile from $E from Voom
voom $elist written 4 months ago by anpham0 • updated 4 months ago by Steve Lianoglou12k
0
votes
0
answers
298
views
0
answers
limma voom for single factor
limma differential expression voom written 4 months ago by bumbum0 • updated 4 months ago by Gordon Smyth32k
1
vote
1
answer
239
views
1
answer
Limma-voom read count analysis
limma voom differentially methylated cpg's read count written 5 months ago by ioannis.konstantinidis0 • updated 5 months ago by Aaron Lun18k
0
votes
1
answer
520
views
1
answer
0
votes
1
answer
623
views
1
answer
confusion with tximport options and resulting matrix
rnaseq limma voom tximport rsem written 6 months ago by arubio0 • updated 5 months ago by Gordon Smyth32k
2
votes
2
answers
185
views
2
answers
6
votes
1
answer
344
views
1
answer
differential expression analysis of htseq data with edgeR/voom
limma edger voom htseq rnaseq123 written 7 months ago by wd10 • updated 7 months ago by Aaron Lun18k
4
votes
1
answer
306
views
1
answer
Subject: Strange glitch in Voom curve resulting from batch effects
batcheffect limma voom covariate written 8 months ago by raf420 • updated 8 months ago by Gordon Smyth32k
1
vote
1
answer
285
views
1
answer
3
votes
1
answer
352
views
1
answer
3
votes
1
answer
882
views
1
answer
Is there any point to TMM-normalize TPM prior to limma-voom?
edger voom tximport limma-voom written 9 months ago by johnmcma10 • updated 9 months ago by Ryan C. Thompson6.2k
2
votes
1
answer
500
views
1
answer
0
votes
1
answer
486
views
1
answer
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