0
votes
1
answer
54
views
1
answer
confusion with tximport options and resulting matrix
rnaseq limma voom tximport rsem written 1 day ago by arubio0 • updated 10 hours ago by Gordon Smyth30k
2
votes
2
answers
80
views
2
answers
6
votes
1
answer
122
views
1
answer
differential expression analysis of htseq data with edgeR/voom
limma edger voom htseq rnaseq123 written 6 weeks ago by wd10 • updated 6 weeks ago by Aaron Lun15k
4
votes
1
answer
189
views
1
answer
Subject: Strange glitch in Voom curve resulting from batch effects
batcheffect limma voom covariate written 11 weeks ago by raf420 • updated 11 weeks ago by Gordon Smyth30k
1
vote
1
answer
169
views
1
answer
3
votes
1
answer
178
views
1
answer
2
votes
1
answer
295
views
1
answer
Is there any point to TMM-normalize TPM prior to limma-voom?
edger voom tximport limma-voom written 3 months ago by johnmcma0 • updated 3 months ago by Ryan C. Thompson5.8k
2
votes
1
answer
302
views
1
answer
0
votes
1
answer
295
views
1
answer
2
votes
1
answer
164
views
1
answer
2
votes
1
answer
164
views
1
answer
edgeR QL with voom weights
edger voom limma-voom written 5 months ago by gregory.l.stone10 • updated 5 months ago by Aaron Lun15k
7
votes
2
answers
264
views
2
answers
1
vote
3
answers
267
views
3
answers
1
vote
1
answer
226
views
1
answer
limma voom analysis with multiple comparisons
limma voom written 8 months ago by ea140220 • updated 8 months ago by Aaron Lun15k
3
votes
1
answer
256
views
1
answer
9
votes
3
answers
437
views
3
answers
DE for genes with very low counts using limma.
limma voom limma-trend written 9 months ago by maltethodberg30 • updated 9 months ago by Gordon Smyth30k
6
votes
1
answer
274
views
1
answer
Combining newer/older RNAseq data, batch correcting
rnaseq limma sva voom batch effect written 9 months ago by schrist110 • updated 9 months ago by Aaron Lun15k
1
vote
1
answer
234
views
1
answer
2
votes
2
answers
297
views
2
answers
Weird results (ribosomal proteins / Y-linked genes) in limma/voom
rnaseq limma voom written 9 months ago by blofeld0 • updated 9 months ago by Gordon Smyth30k
4
votes
2
answers
218
views
2
answers
Where is the source code for qAbundanceDist?
voom written 10 months ago by kjo10 • updated 10 months ago by Gordon Smyth30k
3
votes
2
answers
622
views
2
answers
Pre-processing of RNA-Seq data for WGCNA and DGE
deseq2 wgcna voom rna-seq removebatcheffect() written 10 months ago by gokce.ouz0 • updated 10 months ago by Peter Langfelder1.2k
2
votes
2
answers
216
views
2
answers
2
votes
1
answer
299
views
1
answer
Problems with running limma voom on subsets of genes from WGCNA modules?
limma wgcna voom written 10 months ago by Jenny Drnevich1.9k • updated 10 months ago by Aaron Lun15k
5
votes
2
answers
678
views
2
answers
2
votes
4
answers
1.1k
views
4
answers
RNAseq, what to do if you have no replicates in voom-limma
limma edger voom written 2.0 years ago by Johnny H80 • updated 10 months ago by Konika Chawla20
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