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org.Sc.sgd.db: Yeast ensembl ID to entrez ID conversion problem
go yeast written 9.5 years ago by Julie Zhu • 4.0k
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Postdoctoral positions at Harvard
genetics cancer yeast written 9.2 years ago by Edo Airoldi • 10
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3
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1.2k
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3
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Rsubread crashes in 32bit linux
yeast rsubread written 7.3 years ago by Robert Castelo • 2.3k • updated 7.3 years ago by Wei Shi • 3.2k
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1.1k
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Goseq and yeast
yeast goseq written 4.6 years ago by M.Gierlinski • 0
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Median-Interquartile Normalization
microarray systemsbiology annotation go preprocessing clustering cancer yeast organism written 11.9 years ago by McGee, Monnie • 300
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limma: multiple regression
regression yeast yeast2 limma written 8.3 years ago by Gordon Smyth ♦ 38k
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getSequence from biomaRt changes the order of sequences given as input - is it normal?
yeast biomart written 6.7 years ago by Emmanuel Levy • 270 • updated 6.7 years ago by Steffen Durinck • 540
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GOSemSim problem for yeast proteins
yeast gosemsim written 4.6 years ago by horcsct • 0 • updated 4.6 years ago by Guangchuang Yu • 1.1k
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variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?
variantannotation cancer yeast annotate biostrings written 5.6 years ago by Janet Young • 730 • updated 5.6 years ago by Hervé Pagès ♦♦ 14k
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952
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GO terms for E. coli micro arrays (ecoliK12.db generation)
annotation go yeast db0 probe topgo annotationdbi written 10.3 years ago by Gaspard Lequeux • 20 • updated 10.3 years ago by Marc Carlson • 7.2k
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941
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RE : create an new AnnotatedDataFrame
annotation survival yeast biobase genefilter tkwidgets marray convert arraymagic affyio written 12.1 years ago by Yad Ghavi-Helm • 30 • updated 12.1 years ago by Martin Morgan ♦♦ 23k
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921
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Question: How does limma derives its logFC value in two colored arrays?
yeast affy vsn limma written 9.0 years ago by Gordon Smyth ♦ 38k • updated 9.0 years ago by Sunny Srivastava • 340
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4
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ORF lengths using Yeast Annotation package
yeast genomicranges written 4.9 years ago by dktarathym • 0
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1
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914
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1
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Flanking TSS region for reverse strand using biomaRt
yeast organism biomart written 8.8 years ago by Kishor Tappita • 340 • updated 8.8 years ago by Ania Lorenc • 10
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1
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909
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1
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tilingArray getting started questions
go yeast tilingarray starr written 9.0 years ago by Noah Dowell • 410
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901
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1
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Bioconductor 2.3 is released
acgh sequencing mirna microarray visualization bayesian classification survival yeast lpe written 10.9 years ago by Patrick Aboyoun ♦ 1.6k
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885
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create an new AnnotatedDataFrame
survival yeast biobase genefilter tkwidgets marray convert arraymagic affyio written 12.1 years ago by Yad Ghavi-Helm • 30 • updated 12.1 years ago by Martin Morgan ♦♦ 23k
0
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874
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1
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KEGG & hyperGTest: an example?
annotation yeast organism written 11.9 years ago by Paul Shannon • 1.1k • updated 11.9 years ago by Seth Falcon • 150
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2
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821
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2
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New gage package: Generally Applicable Gene-set/Pathway Analysis
sequencing microarray pathways go yeast gage written 8.9 years ago by Luo Weijun • 1.5k
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816
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1
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I need help making a dcf seed file to encapsulate a genome assembly im using.
cancer yeast bsgenome written 5.7 years ago by Hervé Pagès ♦♦ 14k • updated 5.7 years ago by ashteyma@andrew.cmu.edu • 10
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803
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2
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Rsubread alingner
alignment yeast rsubread written 8.4 years ago by Wei Shi • 3.2k
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792
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1
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retrieving external Gene IDs from TranscriptDB Object
yeast transcriptdb written 6.4 years ago by Stefanie • 360 • updated 6.4 years ago by Ugo Borello • 340
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2
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781
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2
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GOSim yeast
go yeast gosim written 7.3 years ago by Guest User • 12k • updated 2.5 years ago by solis • 0
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777
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mgsa vignette gives an error with the full yeast GAF
go yeast mgsa software error written 4.7 years ago by nmcglincy • 0
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764
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empty go terms with bioMart
go yeast probe process biomart written 8.4 years ago by chawla • 190
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