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Comment: enrichKEGG results for non-model organism
by
Aciole.D
• 0
If anyone still wondering about this: You can filter your 'kegg' object based on a list of target pathways. Look at these fields: `kegg@…
Comment: KEGG enrichment in R and gene IDs
by
Laia
▴ 10
I could finally solve this and I could get KEGG results :) Thank you so much for your help and quick replies. Best, Laia
Comment: KEGG enrichment in R and gene IDs
by
James W. MacDonald
62k
This part is the main issue. ``` ‘GOSemSim’ 2.22.0 is already loaded, but >= 2.23.1 is required ``` You should restart R and then re-insta…
Comment: Correct script for featurecounts in Rsubread
by
rmoorehe
• 0
Thanks for the help. I was able to work through it using the bioconductor link. For some reason, I thought I had to create a new tab delimi…
Comment: DispEsts plot
by
Michael Love
39k
Are the pairs nested within batch or across?
Votes
Comment: RUVr batch correction doubling number of DEGs
Comment: RUVr batch correction doubling number of DEGs
Answer: RUVr batch correction doubling number of DEGs
A: LogFC: how do you determine the cutoff for differentially expressed genes?
Confused about design for RNA seq experiment
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